Hg_chrom9_TN10mRNA_16975
Organism: Heterodera glycines Gene Locus: chr9:2534705-2539116 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.34 | 1.031 | 0.859 | 0.815 | 0.935 | 1.401 | 0.914 | 2.363 | 0.755 | 1.457 | 0.492 | 1.216 | 0.862 | 0.795 | 1.236 | 0.886 | 0.799 | 1.029 | 1.25 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16034
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRK
|
57-77
|
0.974
|
64-84
|
0.999
|
— | — |
0.000
|
— | — |
0.271
|
0.471
|
0.029
|
0.519
|
0.252
|
0.446
|
0.306
|
0.031
|
0.408
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012588
|
1.000
|
1.000
|
Hsc_gene_13149.t1
|
Hsc_gene_13149.t1
|
— |
B4E2M5.3 Ankyrin repeat domain-containing protein 66 [Homo sapiens]
|
KAI1714436.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.947|GO:0009987_0.876|GO:0005575_0.785|GO:0110165_0.780|GO:0016020_0.675|GO:0003674_0.652|GO:0050896_0.608|GO:0065007_0.567|GO:0032501_0.548|GO:0050789_0.547|GO:0005622_0.536|GO:0050794_0.531
|
IPR002110+174-203_212-241_246-310_249-278_284-313_319-340_319-349_346-408_353-384_353-385_386-416_470-500_506-562_509-533_509-539_543-575_578-608_583-668_612-641+|IPR036770+110-292_144-407_293-357_358-409_432-566_464-668_567-673+
|
SM00248+174-203_212-241_249-278_284-313_319-349_353-384_386-416_470-500_509-539_543-575_578-608_612-641+
|
PF12796+246-310_346-408_506-562_583-668+Ankyrin_repeats_(3_copies)
|
— |
PTHR24161+351-560+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
404-475
|
2.000
|
1-403;476-677
|
4zfh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
73961.870
|
7.001
|
9.000
|
24.372
|
10.635
|
45.347
|
54.653
|
14.032
|
10.340
|
52.733
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightgreen
|
532.889
|
168.145
|
590.976
|
631.529
|
720.089
|
776.384
|
366.951
|
1408.154
|
295.608
|
361.347
|
333.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.585
|
1.772
|
0.204
|
0.158
|
— |
-1.071
|
0.751
|
-1.796
|
— | — | — | — | — |
No JSON data available for plots.