Hg_chrom9_TN10mRNA_16977
Organism: Heterodera glycines Gene Locus: chr9:2545137-2552833 Feature type: polypeptideProtein Sequence
Length: 717
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.33 | 0.989 | 0.337 | 1.232 | 1.287 | 0.697 | 1.185 | 1.023 | 1.055 | 0.93 | 2.461 | 1.007 | 1.073 | 1.85 | 1.255 | 0.686 | 0.528 | 0.536 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16036
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKRR,KGGRARKGNGDKRAK
|
34-54
|
0.978
|
18-58
|
0.998
|
— | — |
0.000
|
— | — |
0.212
|
0.258
|
0.059
|
0.547
|
0.185
|
0.302
|
0.321
|
0.124
|
0.508
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012590
|
1.000
|
1.000
|
Hsc_gene_13147.t1
|
Hsc_gene_13147.t1
|
— |
A8NU18.3 24 kDa Ras-like protein [Coprinopsis cinerea okayama7#130]
|
KAI3419701.1 Thromboxane-A synthase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0008150_0.849|GO:0005575_0.848|GO:0110165_0.839|GO:0009987_0.786|GO:0005622_0.756|GO:0065007_0.753|GO:0050789_0.747|GO:0003674_0.728|GO:0050794_0.724|GO:0016020_0.705|GO:0043226_0.663|GO:0043229_0.610|GO:0050896_0.578|GO:0005488_0.569|GO:0051716_0.534|GO:0043227_0.522|GO:0007154_0.502
|
IPR001806+465-716_554-659+|IPR027417+472-664_474-662+|IPR051641+290-708+
|
SM00173+474-661+|SM00175+543-661+
|
PF00071+554-659+Ras_family
|
— |
PTHR45775+290-708+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
84-458
|
2.000
|
1-83;459-717
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
80977.630
|
9.944
|
25.500
|
30.404
|
7.950
|
54.114
|
45.886
|
17.573
|
12.831
|
47.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1375.863
|
1582.898
|
1184.559
|
1117.354
|
301.853
|
357.229
|
321.975
|
610.203
|
4433.168
|
641.000
|
2266.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.647
|
-0.640
|
— |
-1.919
|
— | — |
0.673
|
-0.781
|
2.667
|
— | — | — | — |
No JSON data available for plots.