Hg_chrom9_TN10mRNA_16983
Organism: Heterodera glycines Gene Locus: chr9:2590377-2592985 Feature type: polypeptideProtein Sequence
Length: 555
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 0.88 | 1.081 | 0.373 | 1.291 | 1.016 | 0.858 | 0.991 | 2.002 | 1.144 | 0.956 | 1.696 | 0.4 | 0.728 | 1.324 | 0.618 | 1.122 | 1.119 | 0.693 | 0.424 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16042
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.214
|
0.028
|
0.658
|
0.213
|
0.187
|
0.160
|
0.005
|
0.116
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012593
|
1.000
|
1.000
|
Hsc_gene_13139.t1
|
Hsc_gene_13139.t1
|
— |
Q9N4J8.3 T-complex protein 1 subunit gamma [Caenorhabditis elegans]
|
KAI3419708.1 T-complex protein 1 subunit gamma [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.860|GO:0110165_0.858|GO:0005622_0.798|GO:0005737_0.704|GO:0008150_0.579|GO:0016020_0.520|GO:0043226_0.503|GO:0005829_0.502
|
IPR002194+40-52_61-77_89-97+|IPR002423+35-532+|IPR012719+8-533_8-537+|IPR017998+15-532_37-53_59-77_89-108_375-397_409-421+|IPR027409+214-380_219-371+|IPR027410+144-407_147-406+|IPR027413+17-533_32-531+|IPR053374+8-532+
|
— |
PF00118+35-532+TCP-1/cpn60_chaperonin_family
|
G3DSA:1.10.560.10:FF:000085+1-161+T-complex_protein_1_subunit_gamma|G3DSA:3.50.7.10:FF:000005+219-372+T-complex_protein_1_subunit_gamma
|
PTHR11353+15-532+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
530-555
|
1.000
|
1-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
61180.390
|
6.583
|
0.500
|
28.468
|
5.766
|
47.387
|
52.613
|
14.775
|
13.694
|
49.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
4008.069
|
4833.380
|
3253.008
|
7380.113
|
7337.458
|
5671.890
|
5641.541
|
2966.095
|
1582.026
|
2442.473
|
2073.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.800
|
0.474
|
1.290
|
— |
-0.356
|
— |
-1.042
|
1.071
|
— |
2.403
|
— | — | — |
No JSON data available for plots.