SCN Proteipedia

Hg_chrom9_TN10mRNA_16985

Organism: Heterodera glycines Gene Locus: chr9:2593139-2595749 Feature type: polypeptide

Protein Sequence

Length: 374

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.902	0.808	1.07	0.277	0.713	2.057	2.451	0.535	0.357	0.434	0.608	1.887	0.966	0.874	1.364	0.84	0.614	0.891	1.44	1.18	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16044	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.883

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PQTKRSR,RGMRSGRGGGGGGGGQRGRGGGRGGRGGGGGYG	—	—	—	—	—	—	0.000	—	—	0.846	0.105	0.008	0.412	0.052	0.055	0.030	0.000	0.074	0.086

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004909	2.000	1.000	Hsc_gene_13138.t3	Hsc_gene_13138.t1;Hsc_gene_13138.t2;Hsc_gene_13138.t3	—	Q22037.1 Heterogeneous nuclear ribonucleoprotein A1 [Caenorhabditis elegans]	KAI1730901.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.865\|GO:0110165_0.865\|GO:0008150_0.846\|GO:0003674_0.842\|GO:0005488_0.798\|GO:0097159_0.789\|GO:0003676_0.768\|GO:0009987_0.729\|GO:0003723_0.713\|GO:0005622_0.710\|GO:0043226_0.674\|GO:0043229_0.640\|GO:0008152_0.602\|GO:0016020_0.594\|GO:0044237_0.593\|GO:0044238_0.593\|GO:0009058_0.576\|GO:0009059_0.554\|GO:0010467_0.554\|GO:0043170_0.554\|GO:0044249_0.554\|GO:0006139_0.538\|GO:0065007_0.534\|GO:0043227_0.524\|GO:0050789_0.518\|GO:0043231_0.514\|GO:0050794_0.507\|GO:0090304_0.503	IPR000504+23-106_24-96_25-90_114-191_115-187_116-182+\|IPR012677+19-101_102-208+\|IPR035979+21-120_96-201+	SM00360+24-96_115-187+	PF00076+25-90_116-182+RNA_recognition_motif	G3DSA:3.30.70.330:FF:000040+18-102+Heterogeneous_nuclear_ribonucleoprotein_A2/B1	PTHR48026+18-341+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-10;187-374	1.000	11-186	5wwg_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.963	39521.350	8.208	4.000	21.925	10.428	43.048	56.952	11.765	10.160	58.556

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	lightgreen	365.266	413.326	307.582	328.623	411.939	504.149	723.119	424.966	138.296	326.678	245.943

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.659	-0.468	—	0.294	0.306	0.525	-0.351	0.904	—	—	—	—	—

No JSON data available for plots.

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