Hg_chrom9_TN10mRNA_16987
Organism: Heterodera glycines Gene Locus: chr9:2598658-2601732 Feature type: polypeptideProtein Sequence
Length: 313
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.966 | 0.892 | 0.523 | 1.322 | 0.532 | 0.573 | 1.027 | 1.757 | 1.278 | 1.252 | 0.775 | 1.128 | 1.509 | 1.413 | 0.913 | 1.05 | 0.838 | 1.065 | 1.966 | 0.658 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16046
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-25
|
0.977
|
0.889
|
0.000
|
0.000
|
0.134
|
0.373
|
0.035
|
0.303
|
0.191
|
0.068
|
0.094
|
0.018
|
0.139
|
0.934
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012595
|
1.000
|
1.000
|
Hsc_gene_13125.t1
|
— | — |
P81286.1 Plasminogen [Ovis aries]
|
ABQ02009.1 serine proteinase [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.856|GO:0005575_0.769|GO:0110165_0.746|GO:0003674_0.641|GO:0016020_0.544|GO:0071944_0.544|GO:0008152_0.506|GO:0005886_0.501
|
IPR001254+62-291_63-296_64-291_64-292+|IPR001314+98-113_148-162_240-252+|IPR009003+14-295+|IPR018114+108-113+|IPR033116+241-252+|IPR043504+58-296+
|
SM00020+62-291+
|
PF00089+64-291+Trypsin
|
G3DSA:2.40.10.10:FF:000003+57-296+Transmembrane_serine_protease_3
|
PTHR24252+58-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
307-313
|
1.000
|
1-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.923
|
34257.880
|
9.026
|
16.500
|
19.169
|
13.738
|
37.700
|
62.300
|
13.099
|
6.070
|
54.313
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
72.686
|
35.189
|
39.244
|
28.164
|
30.613
|
99.420
|
519.803
|
23.913
|
14.071
|
16.317
|
15.355
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.459
|
— | — |
1.714
|
2.396
|
-2.164
|
4.584
|
— | — | — | — | — |