Hg_chrom9_TN10mRNA_16990
Organism: Heterodera glycines Gene Locus: chr9:2604331-2607149 Feature type: polypeptideProtein Sequence
Length: 606
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.055 | 0.652 | 1.14 | 0.114 | 1.925 | 1.777 | 0.452 | 1.238 | 0.807 | 1.115 | 1.4 | 0.777 | 0.596 | 1.015 | 2.29 | 0.542 | 0.757 | 0.825 | 0.635 | 0.291 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16049
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,GQQPKLKAPRRKD,RRKERVETHEKPKGK,RRKKTVVAQQQKKRTA,RKMRALMSFQAAKMKRQSK,KRQSKIKSKQFHRIRKRQE,KRRELKVFGQQPKLKAPRR,RRELKVFGQQPKLKAPRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.868
|
0.077
|
0.028
|
0.202
|
0.023
|
0.017
|
0.043
|
0.012
|
0.030
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012597
|
1.000
|
1.000
|
Hsc_gene_13132.t1
|
Hsc_gene_13132.t1
|
— | — |
KAI3419714.1 U3 small nucleolar RNA-associated protein 14 A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006364|GO:0032040
|
GO:0005575_0.800|GO:0110165_0.800|GO:0005622_0.784|GO:0043226_0.743|GO:0043229_0.733|GO:0016020_0.719|GO:0043228_0.699|GO:0043232_0.699|GO:0043227_0.655|GO:0005634_0.632|GO:0043231_0.632|GO:0031974_0.583|GO:0031981_0.583|GO:0043233_0.583|GO:0070013_0.583|GO:0008150_0.531
|
IPR006709+4-323+
|
— |
PF04615+39-357_361-591+Utp14_protein
|
— |
PTHR14150+4-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-486
|
1.000
|
487-606
|
7suk_SS
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
70267.430
|
10.121
|
23.500
|
40.759
|
6.436
|
58.911
|
41.089
|
22.937
|
17.822
|
41.419
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1476.157
|
2210.455
|
1603.275
|
1680.770
|
1775.474
|
1317.152
|
2192.282
|
990.955
|
1572.784
|
864.714
|
1168.172
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.694
|
-0.532
|
0.177
|
— |
-0.416
|
0.746
|
-0.516
|
1.289
|
— | — | — | — | — |
No JSON data available for plots.