SCN Proteipedia

Hg_chrom9_TN10mRNA_16991

Organism: Heterodera glycines Gene Locus: chr9:2607191-2609918 Feature type: polypeptide

Protein Sequence

Length: 535

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.804	0.696	0.85	0.709	1.464	1.39	0.712	1.308	1.205	1.086	1.246	1.209	1.09	0.935	0.877	0.614	0.919	1.359	1.582	0.825	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16050	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.274	0.219	0.076	0.644	0.224	0.123	0.110	0.015	0.139	0.117

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012598	1.000	1.000	Hsc_gene_13133.t1	Hsc_gene_13133.t1	—	P28668.2 Bifunctional glutamate/proline--tRNA ligase [Drosophila melanogaster]	KAF7640237.1 AA_TRNA_LIGASE_II domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0004812\|GO:0004827\|GO:0005524\|GO:0005737\|GO:0006418\|GO:0006433	GO:0008150_0.844\|GO:0005575_0.806\|GO:0110165_0.804\|GO:0003674_0.790\|GO:0009987_0.780\|GO:0003824_0.705\|GO:0008152_0.704\|GO:0044237_0.671\|GO:0005622_0.651\|GO:0005737_0.624\|GO:0044238_0.623\|GO:0009058_0.598\|GO:0043170_0.585\|GO:0019538_0.577\|GO:0044249_0.574\|GO:0140640_0.570\|GO:0140098_0.565\|GO:0016874_0.564\|GO:0009059_0.562\|GO:0006139_0.558\|GO:0004812_0.557\|GO:0004827_0.557\|GO:0016875_0.557\|GO:0140101_0.557\|GO:0010467_0.552\|GO:0090304_0.543\|GO:0016070_0.536\|GO:0006520_0.526\|GO:0006412_0.524\|GO:0006414_0.524\|GO:0006399_0.520\|GO:0006418_0.516\|GO:0006433_0.516\|GO:0043038_0.516\|GO:0043039_0.516	IPR002314+137-304+\|IPR002316+96-114_137-148_167-175_177-188+\|IPR004154+323-424+\|IPR004499+3-535_38-535_40-535+\|IPR006195+75-316+\|IPR016061+451-535+\|IPR017449+445-534_447-535+\|IPR033721+44-306+\|IPR036621+317-442+\|IPR045864+37-316_43-310+	SM00946+451-535+	PF00587+137-304+tRNA_synthetase_class_II_core_domain_(G,_H,_P,_S_and_T)\|PF03129+323-424+Anticodon_binding_domain\|PF09180+451-535+Prolyl-tRNA_synthetase,_C-terminal	G3DSA:3.30.110.30:FF:000001+445-535+Bifunctional_glutamate/proline--tRNA_ligase\|G3DSA:3.30.930.10:FF:000007+37-316+Bifunctional_glutamate/proline--tRNA_ligase\|G3DSA:3.40.50.800:FF:000005+317-442+bifunctional_glutamate/proline--tRNA_ligase	PTHR43382+3-535+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-36	1.000	37-535	6mn8_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.514	60743.800	6.730	2.000	28.598	11.402	46.916	53.084	15.140	13.458	46.355

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	purple	2805.276	1596.396	2147.784	3470.539	4692.998	3823.019	3759.064	1893.626	1629.193	3032.404	2431.028

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.199	0.983	0.801	0.403	-0.281	—	-1.118	1.132	—	—	—	—	—

No JSON data available for plots.

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