Hg_chrom9_TN10mRNA_16993
Organism: Heterodera glycines Gene Locus: chr9:2627069-2628224 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 1.559 | 0.914 | 0.193 | 1.397 | 0.859 | 0.466 | 0.279 | 0.372 | 1.661 | 1.439 | 3.615 | 1.552 | 0.859 | 1.254 | 0.638 | 0.733 | 0.762 | 0.43 | 0.822 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16052
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.343
|
0.237
|
0.015
|
0.739
|
0.071
|
0.222
|
0.241
|
0.008
|
0.436
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012599
|
1.000
|
1.000
|
Hsc_gene_13016.t1
|
Hsc_gene_13016.t1
|
— |
Q18312.2 Regulator of G-protein signaling rgs-3 [Caenorhabditis elegans]
|
KAH7724681.1 RGS-3 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.861|GO:0005575_0.730|GO:0009987_0.730|GO:0110165_0.719|GO:0003674_0.685|GO:0050896_0.681|GO:0065007_0.653|GO:0050789_0.637|GO:0016020_0.626|GO:0050794_0.623|GO:0005622_0.621|GO:0051716_0.576|GO:0005488_0.550|GO:0007154_0.545|GO:0023052_0.545|GO:0005737_0.543|GO:0007165_0.538|GO:0043226_0.531|GO:0005515_0.517|GO:0007186_0.514
|
IPR016137+57-78_60-173_61-171_79-97_147-166+|IPR036305+58-174+|IPR044926+20-178+
|
SM00315+60-173+
|
PF00615+61-171+Regulator_of_G_protein_signaling_domain
|
— |
PTHR10845+41-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13
|
1.000
|
14-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
20651.980
|
9.568
|
4.500
|
29.609
|
9.497
|
48.603
|
51.397
|
16.201
|
13.408
|
43.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
83.161
|
17.460
|
287.637
|
41.736
|
10.485
|
13.957
|
25.360
|
46.203
|
12.439
|
188.434
|
113.007
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.813
|
1.119
|
-2.675
|
-2.025
|
— |
0.873
|
1.634
|
— | — | — | — | — | — |
No JSON data available for plots.