Hg_chrom9_TN10mRNA_16995
Organism: Heterodera glycines Gene Locus: chr9:2631246-2633731 Feature type: polypeptideProtein Sequence
Length: 268
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.215 | 1.041 | 0.611 | 0.643 | 1.306 | 0.67 | 1.066 | 1.493 | 1.41 | 1.311 | 1.074 | 1.756 | 0.622 | 1.005 | 0.685 | 0.8 | 0.918 | 1.187 | 0.287 | 0.329 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16054
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.356
|
0.322
|
0.053
|
0.815
|
0.133
|
0.252
|
0.131
|
0.010
|
0.124
|
0.286
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012601
|
1.000
|
1.000
|
Hsc_gene_13018.t1
|
Hsc_gene_13018.t1
|
— |
G4N292.1 Short-chain dehydrogenase RED3 [Pyricularia oryzae 70-15]
|
KAI1716666.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.794|GO:0110165_0.779|GO:0005622_0.682|GO:0003674_0.654|GO:0005737_0.626|GO:0016020_0.621|GO:0008150_0.612|GO:0043226_0.569|GO:0043229_0.548|GO:0003824_0.545|GO:0043227_0.515
|
IPR002347+14-31_14-146_94-105_193-212_212-229+|IPR036291+14-266+|IPR051468+13-263+
|
— |
PF00106+14-146+short_chain_dehydrogenase
|
— |
PTHR43544+13-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;261-268
|
1.000
|
2-260
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
28583.030
|
6.899
|
2.000
|
24.627
|
6.716
|
42.910
|
57.090
|
13.433
|
11.194
|
53.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
239.919
|
215.105
|
140.432
|
186.827
|
339.217
|
373.053
|
250.128
|
335.356
|
9.765
|
352.277
|
205.486
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.845
|
-0.341
|
0.521
|
0.828
|
— |
-0.569
|
— |
-0.283
|
— | — | — | — | — |
No JSON data available for plots.