Hg_chrom9_TN10mRNA_16998
Organism: Heterodera glycines Gene Locus: chr9:2641771-2642662 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 0.459 | 1.675 | 0.907 | 1.206 | 0.337 | 0.862 | 1.645 | 1.316 | 1.867 | 0.598 | 1.548 | 0.914 | 1.012 | 1.343 | 0.94 | 0.755 | 0.797 | 1.012 | 0.58 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16057
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.170
|
— | — |
0.250
|
0.562
|
0.203
|
0.333
|
0.499
|
0.247
|
0.312
|
0.015
|
0.338
|
0.826
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012603
|
1.000
|
1.000
|
Hsc_gene_13021.t1
|
Hsc_gene_13021.t1
|
— |
Q03575.1 Transthyretin-like protein 5 [Caenorhabditis elegans]
|
KAI1725564.1 transthyretin-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
— |
IPR001534+19-151_39-118+|IPR038479+32-148+
|
— |
PF01060+39-118+Transthyretin-like_family
|
— |
PTHR21700+19-151+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
17010.460
|
4.714
|
-6.500
|
30.263
|
9.868
|
44.737
|
55.263
|
13.816
|
16.447
|
48.684
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2137.749
|
11372.674
|
1956.289
|
541.360
|
868.698
|
942.039
|
1142.082
|
4213.382
|
883.551
|
801.294
|
836.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.768
|
-4.530
|
-1.746
|
0.651
|
— |
0.287
|
2.050
|
-1.739
|
— | — | — | — | — |
No JSON data available for plots.