Hg_chrom9_TN10mRNA_17002
Organism: Heterodera glycines Gene Locus: chr9:2657288-2660048 Feature type: polypeptideProtein Sequence
Length: 517
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.99 | 0.495 | 1.336 | 1.267 | 2.386 | 1.24 | 0.852 | 0.677 | 0.473 | 0.915 | 1.524 | 0.683 | 1.182 | 0.67 | 0.789 | 0.967 | 0.824 | 0.586 | 0.893 | 0.626 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16061
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
Hgg-23|AF344868.1#tn8canujg27055.t1
|
Hgg-23|AF3448681#tn8canujg27055t1
|
— | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-26
|
0.940
|
1.000
|
0.000
|
0.000
|
0.381
|
0.167
|
0.024
|
0.248
|
0.857
|
0.101
|
0.230
|
0.007
|
0.255
|
0.487
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012605
|
1.000
|
1.000
|
Hsc_gene_13027.t1
|
Hsc_gene_13027.t1
|
— |
O08795.1 Glucosidase 2 subunit beta [Mus musculus]
|
KAI1727565.1 glucosidase II beta subunit-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0008150_0.948|GO:0005575_0.945|GO:0110165_0.945|GO:0005622_0.864|GO:0071944_0.833|GO:0005886_0.828|GO:0016020_0.828|GO:0005737_0.792|GO:0043226_0.791|GO:0043229_0.759|GO:0043227_0.723|GO:0043231_0.680|GO:0005773_0.652|GO:0012505_0.647|GO:0003674_0.623|GO:0005488_0.616|GO:0009987_0.594|GO:0005783_0.562|GO:0071840_0.503
|
IPR002048+222-257+|IPR009011+376-504_399-505+|IPR011992+219-273+|IPR028146+38-185+|IPR036055+47-83_50-86+|IPR036607+365-506+|IPR039794+11-508+|IPR044865+404-506+
|
— |
PF12999+38-185+Glucosidase_II_beta_subunit-like|PF13015+365-506+Glucosidase_II_beta_subunit-like_protein
|
— |
PTHR12630+11-508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
132-375;512-517
|
2.000
|
1-131;376-511
|
7k9t_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
57900.960
|
4.417
|
-36.500
|
36.944
|
8.897
|
55.706
|
44.294
|
15.280
|
21.663
|
47.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
3865.821
|
3993.736
|
3064.858
|
4073.334
|
5649.907
|
4909.728
|
3359.055
|
2785.801
|
3178.147
|
4090.700
|
3699.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
-0.108
|
0.518
|
0.440
|
-0.187
|
-0.537
|
-0.919
|
0.412
|
— | — | — | — | — |