Hg_chrom9_TN10mRNA_17003
Organism: Heterodera glycines Gene Locus: chr9:2660493-2662589 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.104 | 1.079 | 0.921 | 1.091 | 0.844 | 1.136 | 0.678 | 1.16 | 1.406 | 1.882 | 0.416 | 1.613 | 0.645 | 0.568 | 1.421 | 1.145 | 0.865 | 0.959 | 0.974 | 0.372 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16062
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRK,KKNTRGTSIQVRIKRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.582
|
0.237
|
0.006
|
0.700
|
0.094
|
0.098
|
0.120
|
0.136
|
0.123
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012606
|
1.000
|
1.000
|
Hsc_gene_13028.t1
|
Hsc_gene_13028.t1;Hsc_gene_21594.t1;Hsc_gene_21597.t1
|
— |
Q9SLX0.2 Importin subunit alpha-1b [Oryza sativa Japonica Group]
|
KAF7635160.1 Importin subunit alpha [Meloidogyne graminicola]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005737|GO:0006606|GO:0061608
|
GO:0005575_0.857|GO:0008150_0.856|GO:0110165_0.854|GO:0009987_0.716|GO:0005622_0.702|GO:0016020_0.684|GO:0043226_0.568|GO:0005737_0.564|GO:0043229_0.549|GO:0043227_0.546|GO:0043231_0.527
|
IPR000225+45-84_86-127_92-127_97-128_129-172_221-262_264-304+|IPR011989+18-447+|IPR016024+17-391+|IPR024931+16-472+
|
SM00185+45-84_86-127_129-172_221-262_264-304+
|
PF00514+92-127+Armadillo/beta-catenin-like_repeat
|
— |
PTHR23316+24-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
462-474
|
1.000
|
1-461
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
52149.270
|
6.998
|
3.500
|
22.152
|
7.173
|
44.515
|
55.485
|
12.025
|
10.127
|
50.633
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
477.813
|
24.401
|
26.800
|
70.450
|
269.407
|
2105.760
|
174.912
|
1812.835
|
1.382
|
407.683
|
233.554
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.393
|
1.504
|
1.906
|
2.980
|
-3.579
|
— |
-3.226
|
-8.439
|
6.004
|
— | — | — |
No JSON data available for plots.