Hg_chrom9_TN10mRNA_17006
Organism: Heterodera glycines Gene Locus: chr9:2668509-2670048 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.292 | 0.606 | 2.874 | 0.833 | 1.425 | 0.992 | 0.833 | 1.111 | 1.051 | 1.178 | 0.98 | 0.772 | 0.962 | 1.927 | 0.714 | 0.546 | 0.421 | 0.855 | 0.163 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16065
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.754
|
0.244
|
0.023
|
0.384
|
0.024
|
0.011
|
0.019
|
0.026
|
0.069
|
0.216
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012609
|
1.000
|
1.000
|
Hsc_gene_13031.t1
|
Hsc_gene_13031.t1
|
— |
Q9XTJ4.1 Nuclear hormone receptor family member nhr-3 [Caenorhabditis elegans]
|
— |
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.934|GO:0005575_0.893|GO:0065007_0.885|GO:0110165_0.883|GO:0050789_0.866|GO:0003674_0.863|GO:0009987_0.862|GO:0050794_0.857|GO:0005488_0.832|GO:0032501_0.822|GO:0032502_0.794|GO:0048856_0.794|GO:0005622_0.783|GO:0007275_0.775|GO:0008152_0.769|GO:0043170_0.769|GO:0005515_0.762|GO:0048731_0.758|GO:0044238_0.757|GO:0048519_0.757|GO:0009058_0.756|GO:0009059_0.756|GO:0010467_0.756|GO:0044237_0.756|GO:0044249_0.756|GO:0019222_0.752|GO:0031323_0.752|GO:0048523_0.744|GO:0060255_0.740|GO:0080090_0.736|GO:0006139_0.730|GO:0009889_0.729|GO:0010556_0.729|GO:0031326_0.729|GO:0071840_0.725|GO:0010468_0.723|GO:0043226_0.722|GO:0034654_0.721|GO:0016070_0.720|GO:0032774_0.720|GO:0090304_0.720|GO:0141187_0.720|GO:0016043_0.719|GO:0019219_0.704|GO:0051252_0.704|GO:0006351_0.703|GO:0043229_0.702|GO:0009892_0.701|GO:0006355_0.698|GO:2001141_0.698|GO:0097159_0.697|GO:0031324_0.696|GO:0010605_0.695|GO:0009890_0.689|GO:0031327_0.689|GO:0003676_0.688|GO:0010558_0.687|GO:0048870_0.687|GO:0051128_0.687|GO:0009790_0.686|GO:0006366_0.685|GO:0016477_0.685|GO:0006357_0.684|GO:0006996_0.684|GO:0045934_0.683|GO:0051253_0.683|GO:0045892_0.681|GO:1902679_0.681|GO:0000122_0.678|GO:0003002_0.678|GO:0007049_0.678|GO:0007389_0.678|GO:0051726_0.678|GO:0000280_0.675|GO:0009952_0.675|GO:0022402_0.675|GO:0048285_0.675|GO:0000278_0.674|GO:0009798_0.674|GO:0010564_0.674|GO:0033043_0.674|GO:0035282_0.674|GO:0140014_0.674|GO:1903047_0.674|GO:0001667_0.673|GO:0000578_0.670|GO:0007088_0.670|GO:0007346_0.670|GO:0007350_0.670|GO:0007351_0.670|GO:0007354_0.670|GO:0007424_0.670|GO:0007427_0.670|GO:0008595_0.670|GO:0009880_0.670|GO:0009948_0.670|GO:0010631_0.670|GO:0035290_0.670|GO:0051783_0.670|GO:0060541_0.670|GO:0090130_0.670|GO:0090132_0.670|GO:0003677_0.667|GO:0043565_0.666|GO:0003690_0.664|GO:1990837_0.664|GO:0001067_0.663|GO:0000976_0.662|GO:0140110_0.660|GO:0003700_0.658|GO:0000977_0.655|GO:0000785_0.654|GO:0000981_0.654|GO:0005694_0.654|GO:0043228_0.654|GO:0043232_0.654|GO:0001217_0.650|GO:0001227_0.650|GO:0008134_0.650|GO:0140297_0.650
|
IPR001628+81-158_81-162+|IPR013088+73-180+
|
SM00399+81-158+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;178-180
|
1.000
|
19-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
19864.040
|
9.604
|
17.500
|
27.222
|
6.111
|
46.667
|
53.333
|
18.889
|
8.333
|
51.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
78.716
|
260.329
|
98.082
|
49.751
|
71.952
|
90.274
|
30.428
|
96.541
|
39.904
|
52.944
|
47.355
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.637
|
-2.525
|
-0.871
|
0.500
|
— |
-1.558
|
— |
-1.524
|
— | — | — | — | — |
No JSON data available for plots.