Hg_chrom9_TN10mRNA_17007
Organism: Heterodera glycines Gene Locus: chr9:2669902-2674728 Feature type: polypeptideProtein Sequence
Length: 694
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.787 | 1.106 | 0.943 | 1.043 | 1.273 | 1.367 | 0.841 | 1.441 | 0.544 | 1.499 | 0.568 | 1.78 | 1.161 | 0.665 | 1.353 | 0.865 | 0.874 | 1.07 | 0.998 | 0.89 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16066
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.415
|
0.257
|
0.013
|
0.630
|
0.105
|
0.219
|
0.140
|
0.063
|
0.353
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012610
|
1.000
|
1.000
|
Hsc_gene_13032.t1
|
Hsc_gene_13032.t1
|
— | — |
KAH7727218.1 mucosa associated lymphoid tissue lymphoma translocation protein 1 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004197|GO:0006508
|
GO:0008150_0.955|GO:0009987_0.902|GO:0005575_0.893|GO:0003674_0.886|GO:0110165_0.882|GO:0065007_0.866|GO:0050789_0.844|GO:0050794_0.820|GO:0050896_0.812|GO:0008152_0.807|GO:0005488_0.802|GO:0005622_0.800|GO:0051716_0.788|GO:0032501_0.786|GO:0044238_0.783|GO:0005515_0.762|GO:0043170_0.762|GO:0048518_0.753|GO:0007154_0.752|GO:0023052_0.748|GO:0048522_0.741|GO:0005737_0.740|GO:0019538_0.739|GO:0007165_0.735|GO:0010646_0.723|GO:0048583_0.717|GO:0023051_0.716|GO:0051239_0.709|GO:0009966_0.708|GO:0007166_0.704|GO:0048584_0.693|GO:0002376_0.690|GO:0051240_0.687|GO:0006508_0.682|GO:0002682_0.681|GO:0002684_0.679|GO:0006955_0.679|GO:0050776_0.677|GO:0050778_0.677|GO:0002253_0.674|GO:0002757_0.674|GO:0002764_0.674|GO:0002252_0.673|GO:0002768_0.673|GO:0002250_0.670|GO:0002429_0.670|GO:0002460_0.670|GO:0002697_0.670|GO:0002699_0.670|GO:0002819_0.670|GO:0002821_0.670|GO:0002822_0.670|GO:0002824_0.670|GO:0050851_0.670|GO:0050852_0.670|GO:0032991_0.627|GO:0005829_0.608|GO:0016020_0.523|GO:0043226_0.462|GO:0003824_0.450|GO:0044237_0.448|GO:0043229_0.447|GO:0009058_0.440|GO:0043227_0.438|GO:0044249_0.422|GO:0051179_0.422|GO:0032502_0.421|GO:0048856_0.421|GO:0043231_0.418|GO:0006810_0.411|GO:0051234_0.411|GO:0007275_0.405|GO:0019222_0.405|GO:0009059_0.402|GO:0016740_0.400|GO:0031323_0.398|GO:0010467_0.397|GO:0060255_0.393|GO:0006139_0.391|GO:0080090_0.388|GO:0006950_0.386|GO:0030154_0.385|GO:0048869_0.385|GO:0051641_0.383|GO:0042221_0.382|GO:0034654_0.381|GO:0009889_0.380|GO:0009893_0.379|GO:0031326_0.379|GO:0090304_0.379|GO:0048468_0.378|GO:0140096_0.378|GO:0010556_0.377|GO:0010468_0.376|GO:0009056_0.375|GO:0016787_0.375|GO:0010604_0.373|GO:0010647_0.373|GO:0016070_0.372|GO:0036094_0.372|GO:0141187_0.371|GO:0023056_0.370|GO:0031325_0.370|GO:0032774_0.370|GO:0008219_0.369|GO:0097159_0.369|GO:0012501_0.367|GO:0035556_0.367|GO:0009891_0.366|GO:0051246_0.365|GO:0051649_0.365|GO:1902531_0.365|GO:0006915_0.364|GO:0031328_0.364|GO:0043067_0.364|GO:0009057_0.363|GO:0019219_0.363|GO:0009967_0.362|GO:0010557_0.362|GO:0042981_0.362|GO:0065009_0.362|GO:0141124_0.362|GO:0051252_0.360|GO:0006351_0.358|GO:1901700_0.358|GO:0006355_0.357|GO:0010628_0.357|GO:0042802_0.357|GO:0050790_0.357|GO:2001141_0.357|GO:0046907_0.355|GO:0019899_0.354|GO:0030163_0.354|GO:0050793_0.354|GO:1902533_0.354|GO:0008283_0.353|GO:0009605_0.353|GO:0044419_0.353|GO:0003676_0.351|GO:0070887_0.351
|
IPR001309+284-410+|IPR007110+104-183+|IPR011600+286-506+|IPR013783+116-193+|IPR029030+284-512+|IPR033540+530-694+|IPR036179+124-188+|IPR052039+131-685+
|
— |
PF00656+286-506+Caspase_domain|PF13927+129-185+Immunoglobulin_domain
|
— |
PTHR22576+131-685+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-694
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
78421.960
|
5.909
|
-7.000
|
26.081
|
11.383
|
47.550
|
52.450
|
13.256
|
12.824
|
48.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1062.207
|
1338.083
|
1510.303
|
1274.409
|
1035.170
|
894.556
|
1308.387
|
1143.657
|
685.553
|
943.780
|
833.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.207
|
-0.135
|
-0.332
|
-0.196
|
0.559
|
0.248
|
0.337
|
— | — | — | — | — |
No JSON data available for plots.