Hg_chrom9_TN10mRNA_17009
Organism: Heterodera glycines Gene Locus: chr9:2676015-2679278 Feature type: polypeptideProtein Sequence
Length: 734
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 1.457 | 1.288 | 0.376 | 0.817 | 0.943 | 1.671 | 0.613 | 0.757 | 1.086 | 0.599 | 1.843 | 1.211 | 1.048 | 1.446 | 0.603 | 0.737 | 0.991 | 0.943 | 0.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16067
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.819
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRSIAELFEEDARVKDK,KKDVLLRLFQLELQTAKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.657
|
0.209
|
0.022
|
0.499
|
0.087
|
0.058
|
0.079
|
0.013
|
0.085
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002547
|
3.000
|
1.000
|
Hsc_gene_13033.t1
|
— | — |
Q75HJ0.1 DEAD-box ATP-dependent RNA helicase 37 [Oryza sativa Japonica Group]
|
KAI1719008.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.807|GO:0110165_0.794|GO:0008150_0.728|GO:0003674_0.721|GO:0005622_0.710|GO:0005737_0.651|GO:0009987_0.606|GO:0043226_0.591|GO:0005488_0.576|GO:0043229_0.569
|
IPR001650+565-714_572-674_587-675+|IPR011545+332-509+|IPR014001+327-539_339-523+|IPR014014+308-336+|IPR027417+274-522_387-684_523-717+
|
SM00487+327-539+|SM00490+587-675+
|
PF00270+332-509+DEAD/DEAH_box_helicase|PF00271+572-674+Helicase_conserved_C-terminal_domain
|
— |
PTHR47958+302-702+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-268
|
1.000
|
269-734
|
5nt7_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
78759.570
|
6.109
|
-2.500
|
24.251
|
8.174
|
42.916
|
57.084
|
12.262
|
11.989
|
57.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightyellow
|
3316.763
|
625.152
|
2974.004
|
2940.086
|
4780.946
|
2071.022
|
3901.613
|
474.874
|
25.720
|
7828.660
|
4484.543
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.017
|
2.096
|
— |
0.670
|
-1.193
|
0.926
|
-2.229
|
3.181
|
-6.947
|
7.045
|
— | — | — |
No JSON data available for plots.