SCN Proteipedia

Hg_chrom9_TN10mRNA_17011

Organism: Heterodera glycines Gene Locus: chr9:2679626-2686520 Feature type: polypeptide

Protein Sequence

Length: 1,285

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.959	1.068	0.821	0.859	0.947	1.357	0.704	1.051	1.211	1.367	0.719	1.785	1.448	0.853	1.143	0.889	0.982	1.108	0.838	0.572	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16068	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum\|lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.098	0.134	0.027	0.123	0.659	0.634	0.618	0.017	0.456	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004911	1.000	2.000	Hsc_gene_13034.t1;Hsc_gene_13034.t2	Hsc_gene_13034.t1;Hsc_gene_13034.t2	—	P90747.3 Probable manganese-transporting ATPase catp-8 [Caenorhabditis elegans]	KAF7635252.1 Cation-transporting ATPase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887\|GO:0140358	GO:0005575_0.930\|GO:0110165_0.927\|GO:0016020_0.882\|GO:0008150_0.836\|GO:0071944_0.819\|GO:0005886_0.808\|GO:0009987_0.733\|GO:0005622_0.641\|GO:0043226_0.598\|GO:0043229_0.568\|GO:0043227_0.566\|GO:0005737_0.563\|GO:0051179_0.552\|GO:0003674_0.542\|GO:0043231_0.538\|GO:0005773_0.535\|GO:0051234_0.533	IPR001757+404-520+\|IPR006544+7-1267_52-1254+\|IPR008250+256-389+\|IPR018303+493-499+\|IPR023214+714-930+\|IPR023298+167-1274+\|IPR023299+497-724_517-713+\|IPR036412+486-917+\|IPR044492+473-1061+\|IPR047820+178-1213+	—	PF00122+257-469+E1-E2_ATPase\|PF13246+575-656+Cation_transport_ATPase_(P-type)	G3DSA:3.40.50.1000:FF:000056+714-926+Cation-transporting_ATPase	PTHR45630+7-1267+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	507-555;901-1035	3.000	1-506;556-900;1036-1285	9gqo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.671	143402.340	7.581	15.500	22.646	10.350	44.747	55.253	12.451	10.195	49.728

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	blue	4185.898	3469.985	2573.078	2634.358	3216.839	3104.376	4314.050	2826.156	2762.780	7939.155	5720.709

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.660	-0.535	0.142	0.256	—	0.484	—	0.751	-1.629	—	—	—	—

No JSON data available for plots.

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