Hg_chrom9_TN10mRNA_17012
Organism: Heterodera glycines Gene Locus: chr9:2686964-2689461 Feature type: polypeptideProtein Sequence
Length: 545
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 1.536 | 0.734 | 1.076 | 0.979 | 1.411 | 0.568 | 0.917 | 1.264 | 1.265 | 1.001 | 1.295 | 2.141 | 0.706 | 1.348 | 0.577 | 0.932 | 0.751 | 2.117 | 0.648 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16069
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
12-Not_Clustered
|
0.890
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
nucleus
|
KRRK
|
— | — | — | — | — |
0.873
|
0.423
|
0.000
|
— |
0.502
|
0.150
|
0.017
|
0.634
|
0.138
|
0.347
|
0.216
|
0.058
|
0.078
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012611
|
1.000
|
1.000
|
Hsc_gene_13035.t1
|
Hsc_gene_13035.t1
|
— |
Q8LA32.1 Probable E3 ubiquitin-protein ligase LUL4 [Arabidopsis thaliana]
|
EWM25530.1 ring u-box domain-containing protein [Nannochloropsis gaditana]
|
MQL82317
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.733|GO:0005575_0.705|GO:0110165_0.695|GO:0009987_0.666|GO:0003674_0.648|GO:0065007_0.586|GO:0005622_0.571|GO:0050789_0.567|GO:0050794_0.554|GO:0003824_0.525
|
IPR001841+493-532_493-533+|IPR013083+472-544+
|
SM00184+493-532+
|
PF13920+490-538+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR22696+490-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-545
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
63563.370
|
9.261
|
23.000
|
24.954
|
14.495
|
46.789
|
53.211
|
15.046
|
9.908
|
43.670
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
852.966
|
78.444
|
279.935
|
197.233
|
97.019
|
22.841
|
137.282
|
28.051
|
3647.540
|
680.768
|
1952.242
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.605
|
1.193
|
-0.396
|
-1.052
|
-2.073
|
2.596
|
— |
2.435
|
2.315
|
-4.051
|
— | — | — |