Hg_chrom9_TN10mRNA_17013
Organism: Heterodera glycines Gene Locus: chr9:2689626-2694141 Feature type: polypeptideProtein Sequence
Length: 943
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 1.159 | 1.022 | 0.475 | 1.166 | 0.843 | 0.669 | 1.06 | 1.343 | 0.989 | 1.173 | 2.246 | 1.267 | 1.081 | 1.255 | 0.773 | 0.921 | 1.237 | 0.571 | 1.092 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16070
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KALKKKKKKAIGE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.455
|
0.074
|
0.018
|
0.631
|
0.274
|
0.174
|
0.123
|
0.002
|
0.117
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012612
|
1.000
|
1.000
|
Hsc_gene_13036.t1
|
Hsc_gene_13036.t1
|
— |
Q21691.1 Nuclear RNAi defective-3 protein [Caenorhabditis elegans]
|
KAI1727389.1 piwi domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0005515
|
GO:0008150_0.904|GO:0005575_0.798|GO:0110165_0.795|GO:0005622_0.746|GO:0009987_0.709|GO:0003674_0.650|GO:0008152_0.647|GO:0043226_0.644|GO:0043229_0.637|GO:0065007_0.626|GO:0016020_0.608|GO:0050789_0.605|GO:0043170_0.588|GO:0005737_0.584|GO:0050794_0.570|GO:0044237_0.567|GO:0009058_0.556|GO:0005488_0.541|GO:0044249_0.539|GO:0043227_0.531|GO:0009059_0.510|GO:0043231_0.505|GO:0010467_0.501
|
IPR003100+306-415+|IPR003165+578-902_581-901+|IPR012337+564-899+|IPR036085+288-439+|IPR036397+652-910+
|
SM00950+578-902+
|
PF02170+306-415+PAZ_domain|PF02171+581-901+Piwi_domain
|
— |
PTHR22891+72-905+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-943
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
107813.230
|
8.807
|
22.000
|
28.632
|
11.135
|
47.932
|
52.068
|
16.013
|
12.619
|
47.508
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
2028.220
|
1027.968
|
2249.656
|
1963.278
|
3806.469
|
2832.532
|
5429.027
|
1160.285
|
51.319
|
1909.018
|
1112.861
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
0.796
|
— |
0.924
|
-0.412
|
0.950
|
-1.399
|
2.372
|
-5.353
|
5.445
|
— | — | — |
No JSON data available for plots.