Hg_chrom9_TN10mRNA_17014
Organism: Heterodera glycines Gene Locus: chr9:2697317-2700880 Feature type: polypeptideProtein Sequence
Length: 281
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.786 | 1.49 | 0.518 | 0.491 | 1.483 | 0.821 | 0.466 | 0.89 | 1.107 | 2.308 | 0.917 | 0.628 | 0.89 | 0.821 | 1.453 | 1.576 | 0.992 | 0.431 | 0.0 | 0.314 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16071
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
46-68
|
0.970
|
32-73
|
0.971
|
— | — |
0.000
|
— | — |
0.284
|
0.196
|
0.083
|
0.610
|
0.104
|
0.489
|
0.309
|
0.041
|
0.448
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012613
|
1.000
|
1.000
|
Hsc_gene_13039.t1
|
Hsc_gene_13039.t1
|
— |
Q6DHL5.1 Leucine-rich repeat-containing protein 57 [Danio rerio]
|
KAK5975642.1 Leucine-rich repeat-containing protein 57 [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.935|GO:0110165_0.928|GO:0016020_0.854|GO:0043226_0.839|GO:0043227_0.800|GO:0031982_0.581|GO:0005576_0.570|GO:0005615_0.570|GO:0043230_0.559|GO:0065010_0.559|GO:0070062_0.559|GO:1903561_0.559
|
IPR001611+82-101_104-125_105-161_173-191_173-194+|IPR003591+78-100_102-124_125-148_171-194+|IPR032675+18-265+|IPR050216+16-234+
|
SM00364+79-98_102-121_125-144_148-167_171-190+|SM00369+78-100_102-124_125-148_171-194+
|
PF00560+82-101_173-191+Leucine_Rich_Repeat|PF13855+105-161+Leucine_rich_repeat
|
— |
PTHR48051+16-234+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35
|
1.000
|
36-281
|
7yjw_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
31352.940
|
8.832
|
6.500
|
26.690
|
6.050
|
53.381
|
46.619
|
14.947
|
11.744
|
45.552
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightgreen
|
362.956
|
185.268
|
223.057
|
277.827
|
380.811
|
449.496
|
1270.038
|
378.285
|
91.139
|
332.784
|
229.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.448
|
0.426
|
0.423
|
0.254
|
1.510
|
-0.354
|
1.891
|
— | — | — | — | — |
No JSON data available for plots.