Hg_chrom9_TN10mRNA_17017
Organism: Heterodera glycines Gene Locus: chr9:2722067-2724433 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 0.778 | 1.277 | 0.0 | 0.892 | 0.0 | 0.796 | 0.669 | 0.595 | 0.226 | 0.963 | 0.984 | 0.279 | 1.093 | 4.573 | 2.819 | 0.219 | 0.507 | 0.515 | 0.492 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16074
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK,SSRRRSRSRSRSRGKRSRSRSRSRDRKRRSRSRSLRRRSRSPKRSRSRSVASRSASPPEPKKARHTPSRSRSPDNKRLRSASPRRSRSITPNDRGSRRRSVAKERGSRSPKDRRGGSRSPARRTSRSPSGERDHAAAASRSRSASPRKDGDKSRAIKKEKADSRSRSGSRS
|
80-101
|
0.985
|
— | — | — | — |
0.000
|
— | — |
0.926
|
0.055
|
0.005
|
0.119
|
0.053
|
0.088
|
0.042
|
0.001
|
0.042
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012614
|
1.000
|
1.000
|
Hsc_gene_13042.t1
|
Hsc_gene_13042.t1
|
— |
P26686.4 Serine-arginine protein 55 [Drosophila melanogaster]
|
KAI1728552.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.872|GO:0005575_0.794|GO:0110165_0.791|GO:0005622_0.769|GO:0043226_0.766|GO:0043229_0.766|GO:0005634_0.763|GO:0016020_0.763|GO:0043227_0.763|GO:0043231_0.763|GO:0009987_0.706|GO:0008152_0.691|GO:0009058_0.691|GO:0009059_0.691|GO:0010467_0.691|GO:0043170_0.691|GO:0044237_0.691|GO:0044249_0.691|GO:0006139_0.658|GO:0016070_0.658|GO:0044238_0.658|GO:0090304_0.658|GO:0003674_0.643|GO:0003676_0.643|GO:0005488_0.643|GO:0097159_0.643|GO:0032774_0.638|GO:0034654_0.638|GO:0141187_0.638|GO:0065007_0.627|GO:0050789_0.621|GO:0050794_0.591|GO:0019222_0.522|GO:0031323_0.522|GO:0060255_0.521|GO:0009889_0.516|GO:0003723_0.515|GO:0010556_0.507|GO:0031326_0.507
|
IPR000504+2-72_3-68_4-65+|IPR012677+1-114+|IPR035979+3-98+
|
SM00360+3-68+
|
PF00076+4-65+RNA_recognition_motif
|
— |
PTHR48038+1-74+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
67-299
|
1.000
|
1-66
|
9asq_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
33878.340
|
12.265
|
51.000
|
42.475
|
4.682
|
66.890
|
33.110
|
30.100
|
12.375
|
55.184
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4271.150
|
5158.519
|
4634.352
|
7240.643
|
6864.782
|
5724.802
|
3407.434
|
3300.726
|
3225.792
|
2642.713
|
2892.604
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.383
|
0.352
|
0.752
|
-0.109
|
-0.247
|
-0.739
|
-0.899
|
0.188
|
— | — | — | — | — |
No JSON data available for plots.