Hg_chrom9_TN10mRNA_17018
Organism: Heterodera glycines Gene Locus: chr9:2725478-2726362 Feature type: polypeptideProtein Sequence
Length: 122
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.191 | 0.762 | 0.894 | 0.0 | 0.546 | 0.841 | 2.049 | 0.82 | 1.457 | 1.329 | 0.745 | 1.929 | 0.455 | 1.103 | 3.011 | 0.82 | 0.806 | 0.994 | 0.0 | 0.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16075
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKPTQRRFGGRGGRGGPRGRGRGRGGPPRGGGGGRR
|
36-56
|
0.938
|
— | — | — | — |
0.000
|
— | — |
0.764
|
0.109
|
0.011
|
0.400
|
0.137
|
0.075
|
0.037
|
0.000
|
0.067
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012615
|
1.000
|
1.000
|
Hsc_gene_13043.t1
|
Hsc_gene_13043.t1
|
— |
Q10013.1 Probable small nuclear ribonucleoprotein Sm D1 [Caenorhabditis elegans]
|
KAI3419725.1 putative small nuclear ribonucleoprotein Sm D1 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000387|GO:0003723|GO:0006396
|
GO:0005575_0.894|GO:0110165_0.883|GO:0005622_0.785|GO:0043226_0.771|GO:0043229_0.764|GO:0016020_0.703|GO:0043227_0.633|GO:0043231_0.633|GO:0008150_0.613|GO:0005737_0.607|GO:0005634_0.556|GO:0009987_0.553
|
IPR001163+5-69_5-70+|IPR010920+4-120+|IPR027141+1-108+|IPR034102+2-89+|IPR047575+2-74+
|
SM00651+5-70+
|
PF01423+5-69+LSM_domain
|
G3DSA:2.30.30.100:FF:000008+1-82+Small_nuclear_ribonucleoprotein_Sm_D1
|
PTHR23338+1-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
81-122
|
1.000
|
1-80
|
8ro1_j
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
13323.440
|
12.223
|
15.000
|
29.508
|
4.098
|
46.721
|
53.279
|
21.311
|
8.197
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2990.715
|
2530.112
|
2175.106
|
3088.845
|
3002.893
|
2016.622
|
1153.437
|
1388.304
|
4009.446
|
4319.050
|
4186.363
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.448
|
0.151
|
0.615
|
— |
-0.559
|
-0.796
|
-0.642
|
— | — | — | — | — | — |
No JSON data available for plots.