Hg_chrom9_TN10mRNA_17019
Organism: Heterodera glycines Gene Locus: chr9:2726384-2728534 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.578 | 1.54 | 1.264 | 0.114 | 1.214 | 0.849 | 0.434 | 1.325 | 1.545 | 1.432 | 1.405 | 0.779 | 1.748 | 0.764 | 0.608 | 0.851 | 0.706 | 0.853 | 1.274 | 1.558 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16076
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.155
|
0.023
|
0.671
|
0.186
|
0.218
|
0.218
|
0.070
|
0.067
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012616
|
1.000
|
1.000
|
Hsc_gene_13044.t1
|
Hsc_gene_13044.t1
|
— |
D3K0N9.1 m7GpppX diphosphatase [Ascaris suum]
|
KAI1719952.1 scavenger mRNA decapping enzyme c-term binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000290|GO:0016787
|
GO:0008150_0.935|GO:0009987_0.868|GO:0003674_0.850|GO:0008152_0.824|GO:0044238_0.797|GO:0044237_0.790|GO:0065007_0.779|GO:0009058_0.776|GO:0005575_0.773|GO:0043170_0.768|GO:0050789_0.768|GO:0110165_0.767|GO:0044249_0.759|GO:0050794_0.756|GO:0005488_0.750|GO:0005622_0.750|GO:0009059_0.735|GO:0006139_0.730|GO:0005737_0.721|GO:0010467_0.720|GO:0048518_0.719|GO:0019222_0.717|GO:0009056_0.713|GO:0031323_0.711|GO:0048519_0.711|GO:0090304_0.710|GO:0060255_0.709|GO:0043226_0.706|GO:0080090_0.706|GO:0048523_0.702|GO:0003824_0.699|GO:0016070_0.699|GO:0009889_0.698|GO:0010556_0.698|GO:0031326_0.698|GO:0010468_0.697|GO:0009893_0.696|GO:0043229_0.691|GO:0065008_0.691|GO:0010604_0.689|GO:0009057_0.688|GO:0009892_0.687|GO:0019219_0.687|GO:0010605_0.683|GO:0031324_0.683|GO:0051252_0.683|GO:0009894_0.681|GO:0009890_0.680|GO:0010558_0.680|GO:0031327_0.680|GO:0045935_0.679|GO:0016071_0.678|GO:0034655_0.678|GO:0010608_0.677|GO:0010629_0.677|GO:0051254_0.677|GO:0141188_0.676|GO:0006401_0.675|GO:0006402_0.674|GO:0009896_0.674|GO:0000288_0.670|GO:0000956_0.670|GO:0043487_0.670|GO:0043488_0.670|GO:0050779_0.670|GO:0061013_0.670|GO:0061014_0.670|GO:0061157_0.670|GO:0110154_0.670|GO:0110156_0.670|GO:1903311_0.670|GO:1903313_0.670|GO:0016020_0.626|GO:0016787_0.617|GO:0097159_0.609|GO:0043227_0.596|GO:0003676_0.594|GO:0003723_0.589|GO:0043231_0.586|GO:0016817_0.580|GO:0016818_0.579|GO:0000339_0.569|GO:0000340_0.569
|
IPR008594+2-302_13-301_14-110+|IPR011145+9-110_13-110+|IPR036265+111-299_113-301+
|
— |
PF05652+14-110+Scavenger_mRNA_decapping_enzyme_(DcpS)_N-terminal|PF11969+140-255+Scavenger_mRNA_decapping_enzyme_C-term_binding
|
G3DSA:3.30.428.10:FF:000006+112-302+m7GpppX_diphosphatase
|
PTHR12978+13-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
35320.270
|
6.106
|
-2.000
|
29.139
|
15.894
|
49.338
|
50.662
|
14.901
|
14.238
|
42.384
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1365.215
|
395.188
|
1131.472
|
1310.061
|
1734.568
|
1205.666
|
2918.611
|
581.263
|
986.148
|
1754.395
|
1425.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.286
|
1.592
|
0.322
|
0.373
|
-0.510
|
1.284
|
-1.160
|
2.469
|
— | — | — | — | — |
No JSON data available for plots.