Hg_chrom9_TN10mRNA_17020
Organism: Heterodera glycines Gene Locus: chr9:2729143-2731408 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 1.413 | 1.189 | 0.161 | 1.48 | 1.078 | 0.89 | 0.935 | 0.935 | 0.505 | 1.628 | 0.55 | 0.909 | 0.539 | 1.621 | 1.001 | 0.689 | 1.699 | 0.359 | 0.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16077
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRSDGEASEKEKGR,KKSEVVAANEKKQIKK,KKQNKKSEVVAANEKKQIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.325
|
0.236
|
0.016
|
0.741
|
0.130
|
0.039
|
0.113
|
0.025
|
0.089
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004912
|
2.000
|
1.000
|
Hsc_gene_13073.t1
|
Hsc_gene_13045.t1
|
— | — |
KAI3415904.1 Y box binding protein 1 [Globodera pallida]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.904|GO:0008150_0.858|GO:0110165_0.818|GO:0003674_0.753|GO:0009987_0.753|GO:0005622_0.745|GO:0005488_0.716|GO:0065007_0.669|GO:0008152_0.665|GO:0044237_0.664|GO:0050789_0.662|GO:0005737_0.649|GO:0097159_0.647|GO:0050794_0.645|GO:0003676_0.631|GO:0044238_0.628|GO:0009058_0.621|GO:0043170_0.611|GO:0009059_0.610|GO:0010467_0.610|GO:0044249_0.610|GO:0019222_0.608|GO:0031323_0.605|GO:0006139_0.604|GO:0090304_0.586|GO:0003723_0.578|GO:0016070_0.573|GO:0060255_0.569|GO:0080090_0.567|GO:0009889_0.562|GO:0031326_0.562|GO:0010468_0.557|GO:0010556_0.557|GO:0043226_0.553|GO:0043229_0.536|GO:0016020_0.534
|
IPR002059+49-120_50-120_51-120+|IPR011129+51-121+|IPR012340+41-123_49-119+|IPR019844+63-82+|IPR050181+31-180+
|
SM00357+51-121+
|
PF00313+51-120+'Cold-shock'_DNA-binding_domain
|
— |
PTHR11544+31-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
141-214
|
1.000
|
1-140
|
7f3l_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
23951.880
|
10.060
|
9.000
|
35.981
|
7.009
|
57.477
|
42.523
|
20.561
|
15.421
|
52.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
801.697
|
323.632
|
529.560
|
523.685
|
1160.523
|
631.183
|
2644.623
|
194.389
|
39.757
|
1224.761
|
716.902
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.477
|
0.557
|
— |
1.117
|
-0.866
|
2.080
|
-1.806
|
3.910
|
-5.087
|
3.918
|
— | — | — |
No JSON data available for plots.