Hg_chrom9_TN10mRNA_17027
Organism: Heterodera glycines Gene Locus: chr9:2751791-2753351 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 0.956 | 0.56 | 1.417 | 1.712 | 1.581 | 1.019 | 2.397 | 0.533 | 0.787 | 1.193 | 1.209 | 0.856 | 0.461 | 1.887 | 1.174 | 0.674 | 0.778 | 0.263 | 0.403 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16083
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.764
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRMEEEEEGKKQEKKMGR,RRHIARVHEKRYMEPKREK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.898
|
0.076
|
0.038
|
0.309
|
0.022
|
0.023
|
0.021
|
0.005
|
0.040
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012620
|
1.000
|
1.000
|
Hsc_gene_13052.t1
|
— | — |
Q02026.1 Escargot/snail protein homolog [Pholcus phalangioides]
|
KAH7716348.1 zinc finger protein [Aphelenchus avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.903|GO:0110165_0.901|GO:0005622_0.849|GO:0008150_0.765|GO:0065007_0.752|GO:0050789_0.745|GO:0009987_0.727|GO:0050794_0.726|GO:0043226_0.681|GO:0008152_0.667|GO:0019222_0.667|GO:0031323_0.663|GO:0044237_0.663|GO:0043229_0.661|GO:0043170_0.660|GO:0060255_0.660|GO:0009058_0.657|GO:0009059_0.657|GO:0010467_0.657|GO:0044249_0.657|GO:0044238_0.646|GO:0080090_0.646|GO:0009889_0.634|GO:0010556_0.631|GO:0031326_0.631|GO:0006139_0.629|GO:0090304_0.629|GO:0016070_0.627|GO:0032774_0.627|GO:0034654_0.627|GO:0141187_0.627|GO:0010468_0.623|GO:0019219_0.603|GO:0051252_0.597|GO:2001141_0.594|GO:0006351_0.593|GO:0006355_0.584|GO:0016043_0.576|GO:0043228_0.576|GO:0043232_0.576|GO:0071840_0.576|GO:0006366_0.552|GO:0006357_0.550|GO:0016020_0.539|GO:0003674_0.534|GO:0005488_0.534|GO:0032501_0.504|GO:0043227_0.501
|
IPR013087+8-31_36-60_183-206_219-243_219-248_221-243_249-272_249-273_251-272+|IPR036236+217-269+|IPR051061+183-272+
|
SM00355+8-31_36-60_183-206_219-243_249-272+
|
PF00096+219-243_249-272+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000072+217-246+zinc_finger_protein_143_isoform_X1
|
PTHR46179+183-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
56-231
|
2.000
|
1-55;232-292
|
2wbs_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
32909.890
|
9.045
|
18.000
|
35.274
|
9.589
|
57.877
|
42.123
|
21.918
|
13.356
|
46.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
1177.298
|
1483.067
|
1242.940
|
1037.119
|
1066.803
|
957.591
|
1869.291
|
458.306
|
2439.899
|
277.587
|
1204.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.485
|
-0.653
|
-0.152
|
— | — |
0.976
|
-1.168
|
2.171
|
3.001
|
— | — | — |
6.321
|
No JSON data available for plots.