Hg_chrom9_TN10mRNA_17028
Organism: Heterodera glycines Gene Locus: chr9:2753400-2757441 Feature type: polypeptideProtein Sequence
Length: 913
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.452 | 1.036 | 0.906 | 1.241 | 1.488 | 0.613 | 1.917 | 0.901 | 1.303 | 0.514 | 0.644 | 1.825 | 0.948 | 1.118 | 1.064 | 0.808 | 1.012 | 0.927 | 0.548 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16084
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-36
|
0.904
|
0.999
|
1.000
|
1.000
|
0.236
|
0.037
|
0.011
|
0.302
|
0.329
|
0.506
|
0.363
|
0.084
|
0.706
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012621
|
1.000
|
1.000
|
Hsc_gene_13053.t1
|
Hsc_gene_13053.t1
|
— | — |
KAF7640217.1 SEFIR domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030368
|
GO:0008150_0.967|GO:0005575_0.926|GO:0110165_0.926|GO:0065007_0.869|GO:0071944_0.869|GO:0016020_0.860|GO:0005886_0.858|GO:0050789_0.851|GO:0048518_0.747|GO:0040011_0.683|GO:0040012_0.677|GO:0040017_0.676|GO:0032991_0.623|GO:0098796_0.566|GO:0098797_0.552|GO:0043235_0.548
|
IPR013568+523-600+|IPR039465+436-806+
|
— |
PF08357+523-600+SEFIR_domain
|
— |
PTHR15583+436-806+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-386;776-913
|
2.000
|
1-305;387-775
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
103653.230
|
5.297
|
-21.500
|
25.849
|
13.472
|
50.274
|
49.726
|
12.705
|
13.143
|
49.617
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2402.185
|
3874.378
|
2493.170
|
1438.250
|
1258.148
|
1336.186
|
2409.091
|
2523.629
|
4731.275
|
1211.283
|
2719.851
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.866
|
-1.567
|
-0.685
|
-0.225
|
— |
0.861
|
0.811
|
— |
1.851
|
-1.568
|
— | — | — |