Hg_chrom9_TN10mRNA_17029
Organism: Heterodera glycines Gene Locus: chr9:2757862-2758586 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.459 | 2.448 | 0.837 | 0.227 | 1.425 | 1.181 | 1.018 | 0.329 | 0.877 | 1.511 | 0.698 | 1.161 | 1.279 | 1.139 | 1.611 | 0.376 | 0.863 | 1.096 | 1.012 | 0.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16085
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.689
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.086
|
0.951
|
0.130
|
0.189
|
0.016
|
0.010
|
0.013
|
0.013
|
0.109
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012622
|
1.000
|
1.000
|
Hsc_gene_13054.t1
|
Hsc_gene_13054.t1
|
— |
Q10129.2 Small ribosomal subunit protein bS16m [Caenorhabditis elegans]
|
KAH7695677.1 Protein MRPS-16 [Aphelenchus avenae];KAH7716349.1 Protein MRPS-16 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.904|GO:0110165_0.896|GO:0005622_0.832|GO:0016020_0.824|GO:0043226_0.788|GO:0005737_0.781|GO:0043229_0.776|GO:0043227_0.750|GO:0043231_0.724
|
IPR000307+17-95_17-132_20-78+|IPR023803+2-147_17-108+
|
— |
PF00886+20-78+Ribosomal_protein_S16
|
G3DSA:3.30.1320.10:FF:000004+2-140+28S_ribosomal_protein_S16,_mitochondrial
|
PTHR12919+17-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
113-152
|
1.000
|
1-112
|
7pnw_M
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
17251.530
|
5.947
|
-0.500
|
26.316
|
7.895
|
49.342
|
50.658
|
13.158
|
13.158
|
49.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
darkgrey
|
703.440
|
442.810
|
533.578
|
671.222
|
734.284
|
612.001
|
760.604
|
849.480
|
514.370
|
965.280
|
772.033
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.463
|
0.440
|
— |
-0.248
|
0.325
|
0.366
|
— | — | — | — | — | — |
No JSON data available for plots.