Hg_chrom9_TN10mRNA_17030
Organism: Heterodera glycines Gene Locus: chr9:2758878-2760803 Feature type: polypeptideProtein Sequence
Length: 412
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 1.016 | 0.75 | 0.502 | 0.93 | 0.747 | 0.809 | 1.578 | 0.917 | 1.706 | 0.993 | 1.428 | 1.551 | 0.653 | 0.892 | 1.456 | 0.597 | 0.699 | 1.494 | 1.071 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16086
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.581
|
0.231
|
0.014
|
0.681
|
0.339
|
0.331
|
0.146
|
0.184
|
0.157
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004915
|
1.000
|
2.000
|
Hsc_gene_13055.t1;Hsc_gene_13055.t2
|
Hsc_gene_13055.t2
|
— |
Q9JJK2.1 LanC-like protein 2 [Mus musculus]
|
KAI1716466.1 lanthionine synthetase c-like protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0031179
|
GO:0008150_0.936|GO:0009987_0.878|GO:0003674_0.856|GO:0050896_0.779|GO:0005575_0.754|GO:0110165_0.753|GO:0051716_0.742|GO:0016020_0.697|GO:0065007_0.633|GO:0050789_0.620|GO:0050794_0.600|GO:0005488_0.584|GO:0071944_0.571|GO:0005886_0.562|GO:0042221_0.545|GO:0007154_0.543|GO:0023052_0.540|GO:0007165_0.532|GO:0070887_0.520
|
IPR007822+57-409_58-76_62-407_159-174_222-238_281-301_328-341_379-396+|IPR012341+2-409+|IPR020464+11-24_189-204_211-223_259-274_298-319_344-362_395-409+
|
SM01260+57-409+
|
PF05147+62-407+Lanthionine_synthetase_C-like_protein
|
— |
PTHR12736+13-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-412
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
46153.910
|
8.638
|
11.500
|
23.786
|
14.320
|
44.903
|
55.097
|
14.078
|
9.709
|
47.087
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
830.411
|
933.343
|
473.201
|
398.719
|
471.791
|
458.168
|
564.144
|
505.690
|
347.917
|
1945.214
|
1260.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.209
|
-1.364
|
-0.139
|
0.211
|
— |
0.310
|
— |
0.299
|
— | — | — | — | — |
No JSON data available for plots.