Hg_chrom9_TN10mRNA_17031
Organism: Heterodera glycines Gene Locus: chr9:2761852-2763692 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.147 | 0.868 | 1.018 | 0.644 | 1.378 | 1.436 | 0.444 | 1.467 | 1.659 | 1.117 | 0.727 | 2.667 | 1.259 | 0.667 | 1.361 | 1.105 | 0.568 | 0.848 | 0.0 | 0.549 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16087
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.816
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRCDILKYVDRRYRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.624
|
0.141
|
0.015
|
0.653
|
0.049
|
0.130
|
0.153
|
0.009
|
0.030
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012623
|
1.000
|
1.000
|
Hsc_gene_13056.t1
|
Hsc_gene_13056.t1
|
— |
Q497D6.1 Protein DDI1 homolog 2 [Xenopus tropicalis]
|
KAI1696855.1 aspartyl protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0008150_0.830|GO:0005575_0.727|GO:0110165_0.711|GO:0009987_0.683|GO:0005622_0.679|GO:0003674_0.632|GO:0065007_0.619|GO:0005737_0.592|GO:0005488_0.572|GO:0008152_0.571|GO:0016020_0.551|GO:0044238_0.551|GO:0043170_0.531|GO:0043226_0.528|GO:0005515_0.525|GO:0043229_0.514
|
IPR019103+211-334_218-342+|IPR021109+212-358_228-334+
|
— |
PF09668+211-334+Aspartyl_protease
|
— |
PTHR12917+1-362+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-375
|
4rgh_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
42331.490
|
5.976
|
-3.500
|
28.267
|
9.333
|
48.800
|
51.200
|
14.400
|
13.867
|
45.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
1495.846
|
1908.947
|
1369.892
|
2051.411
|
1982.043
|
1816.088
|
2139.759
|
1906.586
|
571.501
|
1175.180
|
916.460
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.708
|
— |
0.691
|
— | — |
0.248
|
— |
0.309
|
— | — | — | — | — |
No JSON data available for plots.