Hg_chrom9_TN10mRNA_17032
Organism: Heterodera glycines Gene Locus: chr9:2764263-2765842 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.627 | 1.422 | 0.85 | 0.248 | 1.319 | 1.015 | 1.071 | 2.518 | 1.439 | 0.972 | 0.709 | 0.635 | 2.098 | 0.761 | 1.248 | 0.874 | 0.59 | 1.036 | 0.83 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16088
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.428
|
0.224
|
0.059
|
0.482
|
0.264
|
0.370
|
0.171
|
0.011
|
0.387
|
0.734
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012624
|
1.000
|
1.000
|
Hsc_gene_13057.t1
|
Hsc_gene_13057.t1
|
— |
P36573.1 32 kDa beta-galactoside-binding lectin [Caenorhabditis elegans]
|
KAF7639365.1 Galectin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.718|GO:0110165_0.703|GO:0008150_0.685|GO:0009987_0.604|GO:0003674_0.528
|
IPR001079+7-142_8-140_8-141_9-142_13-141_148-277_149-275_150-275_151-277_155-276+|IPR013320+4-149_148-276+|IPR044156+7-97+
|
SM00276+7-142_148-277+|SM00908+13-141_155-276+
|
PF00337+8-141_150-275+Galactoside-binding_lectin
|
G3DSA:2.60.120.200:FF:000124+3-143+Galectin-4|G3DSA:2.60.120.200:FF:000276+146-277+Galectin
|
PTHR11346+7-97+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
31572.490
|
6.740
|
2.000
|
28.417
|
16.187
|
48.201
|
51.799
|
15.827
|
12.590
|
46.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
4014.705
|
10058.544
|
4189.127
|
1609.948
|
2387.602
|
3438.611
|
2876.005
|
6717.477
|
2154.692
|
4219.324
|
3334.482
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.494
|
-2.780
|
-1.270
|
0.537
|
0.541
|
-0.247
|
0.864
|
-1.082
|
— | — | — | — | — |
No JSON data available for plots.