Hg_chrom9_TN10mRNA_17033
Organism: Heterodera glycines Gene Locus: chr9:2766478-2767354 Feature type: polypeptideProtein Sequence
Length: 114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 1.02 | 0.159 | 0.907 | 0.439 | 0.9 | 1.149 | 0.439 | 0.975 | 1.067 | 2.259 | 1.032 | 0.487 | 0.843 | 2.327 | 0.501 | 1.15 | 0.93 | 0.0 | 1.032 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16089
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.862
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
GGKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.539
|
0.185
|
0.028
|
0.565
|
0.312
|
0.070
|
0.243
|
0.001
|
0.076
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012625
|
1.000
|
1.000
|
Hsc_gene_13058.t1
|
Hsc_gene_13058.t1
|
— |
O42846.1 Large ribosomal subunit protein eL34A [Schizosaccharomyces pombe 972h-]
|
KAI1714461.1 ribosomal protein l34e domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.940|GO:0110165_0.934|GO:0005622_0.881|GO:0043226_0.751|GO:0043229_0.747|GO:0005737_0.722|GO:0043228_0.622|GO:0043232_0.613|GO:0005829_0.580|GO:0016020_0.571|GO:0005840_0.535|GO:0022626_0.535|GO:0032991_0.519|GO:1990904_0.519|GO:0043227_0.516|GO:0043231_0.505
|
IPR008195+1-94_1-109_13-26_26-43_44-54_64-86+|IPR018065+15-28+
|
— |
PF01199+1-94+Ribosomal_protein_L34e
|
— |
PTHR46595+1-109+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
109-114
|
1.000
|
1-108
|
8eui_g
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.962
|
12728.150
|
11.861
|
26.500
|
30.702
|
6.140
|
49.123
|
50.877
|
27.193
|
3.509
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
9259.090
|
5341.054
|
8268.378
|
11512.319
|
12237.435
|
10986.043
|
7073.174
|
5478.962
|
14338.419
|
6918.191
|
10098.289
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.401
|
0.971
|
0.586
|
— | — |
-0.625
|
-1.109
|
0.511
|
— | — | — | — | — |
No JSON data available for plots.