Hg_chrom9_TN10mRNA_17034
Organism: Heterodera glycines Gene Locus: chr9:2767512-2768805 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.03 | 1.472 | 0.921 | 0.655 | 1.002 | 0.73 | 0.829 | 1.424 | 1.477 | 1.368 | 0.767 | 0.558 | 1.231 | 0.548 | 1.485 | 1.13 | 0.674 | 0.911 | 1.217 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.156
|
0.780
|
0.041
|
0.301
|
0.023
|
0.025
|
0.030
|
0.248
|
0.045
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012626
|
1.000
|
1.000
|
Hsc_gene_13059.t2
|
Hsc_gene_13059.t1;Hsc_gene_13059.t2
|
— |
Q9Y234.1 Lipoyl amidotransferase LIPT1, mitochondrial [Homo sapiens]
|
KAI1702643.1 putative lipoate-protein ligase A [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009249|GO:0036211
|
GO:0003674_0.672|GO:0005575_0.667|GO:0008150_0.636|GO:0110165_0.633|GO:0005622_0.579|GO:0005737_0.537|GO:0003824_0.525|GO:0008152_0.524
|
IPR004143+24-233_41-218+|IPR004562+12-284+|IPR045864+7-273_15-270+
|
— |
PF21948+24-233+Lipoyl_protein_ligase_A/B_catalytic_domain
|
— |
PTHR12561+12-284+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
35263.120
|
8.484
|
8.500
|
26.266
|
11.076
|
47.468
|
52.532
|
15.190
|
11.076
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
617.736
|
389.218
|
373.049
|
438.738
|
519.252
|
453.249
|
555.457
|
380.724
|
211.079
|
1378.155
|
877.979
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.291
|
— |
0.343
|
0.211
|
-0.181
|
0.304
|
-0.356
|
0.688
|
-2.822
|
— | — | — | — |
No JSON data available for plots.