Hg_chrom9_TN10mRNA_17035
Organism: Heterodera glycines Gene Locus: chr9:2768976-2769638 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 0.206 | 1.609 | 0.61 | 1.475 | 1.361 | 0.948 | 2.655 | 0.787 | 1.196 | 1.475 | 1.041 | 0.737 | 0.851 | 2.167 | 0.379 | 0.87 | 0.402 | 0.681 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16091
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
EKTKGHKRRLRALR,KKHTQSNKTRKRSGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.807
|
0.149
|
0.004
|
0.452
|
0.023
|
0.024
|
0.047
|
0.000
|
0.034
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012627
|
1.000
|
1.000
|
Hsc_gene_13060.t1
|
Hsc_gene_13060.t1
|
— |
Q9U239.1 Zinc finger protein 593 homolog [Caenorhabditis elegans]
|
KAH7731079.1 Protein Y56A3A.18 [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.918|GO:0110165_0.909|GO:0005622_0.860|GO:0043226_0.806|GO:0016020_0.805|GO:0043229_0.798|GO:0043227_0.748|GO:0043231_0.735|GO:0008150_0.649|GO:0005634_0.640|GO:0009987_0.601|GO:0003674_0.584|GO:0005488_0.583|GO:0043228_0.510|GO:0043232_0.510
|
IPR013087+52-74+|IPR022755+50-75+|IPR036236+37-98+|IPR051879+5-104+
|
— |
PF12171+50-75+Zinc-finger_double-stranded_RNA-binding
|
G3DSA:3.30.160.60:FF:000299+36-99+Zinc_finger_protein_593
|
PTHR46095+5-104+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-113
|
0.000
|
— |
1zr9_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
13118.810
|
9.123
|
6.000
|
43.363
|
10.619
|
57.522
|
42.478
|
25.664
|
17.699
|
40.708
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
725.482
|
387.664
|
363.433
|
732.558
|
754.274
|
471.778
|
597.890
|
259.695
|
1508.085
|
705.184
|
1049.284
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.325
|
0.781
|
1.121
|
— |
-0.662
|
0.353
|
-0.967
|
1.347
|
— | — | — | — | — |
No JSON data available for plots.