Hg_chrom9_TN10mRNA_17037
Organism: Heterodera glycines Gene Locus: chr9:2779858-2783603 Feature type: polypeptideProtein Sequence
Length: 621
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.161 | 0.899 | 0.673 | 0.666 | 1.047 | 1.486 | 1.169 | 0.886 | 1.324 | 1.001 | 0.708 | 1.326 | 1.476 | 0.867 | 1.183 | 0.943 | 0.528 | 1.22 | 0.619 | 0.663 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16093
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
28-48
|
0.995
|
14-51
|
0.990
|
— | — |
0.000
|
— | — |
0.097
|
0.924
|
0.414
|
0.358
|
0.076
|
0.111
|
0.105
|
0.031
|
0.041
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012629
|
1.000
|
1.000
|
Hsc_gene_13062.t1
|
Hsc_gene_13062.t1
|
— |
P34385.1 Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Caenorhabditis elegans]
|
KAI1731401.1 carboxyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016874
|
GO:0005575_0.665|GO:0110165_0.663|GO:0008150_0.652|GO:0005622_0.563|GO:0005737_0.521
|
IPR011762+82-351+|IPR011763+361-608+|IPR029045+115-341_310-598+|IPR034733+120-606+|IPR045190+56-621+
|
— |
PF01039+120-606+Carboxyl_transferase_domain
|
G3DSA:3.90.226.10:FF:000004+355-621+Methylcrotonoyl-CoA_carboxylase_beta_chain|G3DSA:3.90.226.10:FF:000046+78-343+Geranyl-CoA_carboxylase_beta_subunit
|
PTHR22855+56-621+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-621
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
67594.310
|
7.929
|
8.500
|
22.222
|
10.145
|
41.707
|
58.293
|
12.238
|
9.984
|
51.691
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
1005.802
|
1912.504
|
1334.326
|
1186.500
|
1382.623
|
1281.451
|
1322.429
|
971.904
|
520.514
|
488.095
|
501.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.749
|
-0.826
|
— |
0.189
|
— | — |
-0.503
|
0.586
|
— | — | — | — | — |
No JSON data available for plots.