Hg_chrom9_TN10mRNA_17039
Organism: Heterodera glycines Gene Locus: chr9:2792915-2794283 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 0.678 | 0.848 | 0.302 | 0.826 | 1.495 | 0.798 | 1.458 | 1.749 | 1.143 | 0.663 | 1.715 | 1.782 | 1.233 | 1.13 | 0.875 | 0.574 | 1.193 | 1.346 | 1.372 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16095
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — |
32-56
|
0.988
|
— | — |
0.000
|
— | — |
0.153
|
0.771
|
0.099
|
0.183
|
0.399
|
0.157
|
0.084
|
0.407
|
0.239
|
0.228
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012631
|
1.000
|
1.000
|
Hsc_gene_13064.t1
|
Hsc_gene_13064.t1
|
— | — |
KAI3421898.1 Mtch-1p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.891|GO:0110165_0.887|GO:0016020_0.839|GO:0005622_0.790|GO:0005737_0.767|GO:0008150_0.764|GO:0043226_0.761|GO:0043229_0.745|GO:0043227_0.739|GO:0043231_0.726|GO:0009987_0.705|GO:0003674_0.700|GO:0051179_0.574|GO:0006810_0.572|GO:0051234_0.572|GO:0005739_0.565|GO:0071840_0.539|GO:0016043_0.536|GO:0051641_0.517|GO:0006996_0.508|GO:0033036_0.508|GO:0051649_0.507|GO:0008104_0.505|GO:0061024_0.505|GO:0070727_0.505|GO:0045184_0.503
|
IPR018108+141-234_152-217+|IPR023395+11-299_16-321+
|
— |
PF00153+152-217+Mitochondrial_carrier_protein
|
— |
PTHR10780+22-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-343
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
39390.550
|
7.882
|
6.000
|
22.449
|
15.743
|
40.816
|
59.184
|
12.828
|
9.621
|
44.315
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
2394.145
|
2045.944
|
2142.306
|
2986.725
|
3561.254
|
3589.454
|
2659.833
|
3282.238
|
933.868
|
2173.575
|
1642.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.163
|
0.409
|
0.588
|
0.222
|
— |
-0.421
|
— | — | — | — | — | — | — |
No JSON data available for plots.