Hg_chrom9_TN10mRNA_17046
Organism: Heterodera glycines Gene Locus: chr9:2834421-2835270 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 0.926 | 0.724 | 0.343 | 0.829 | 1.021 | 0.948 | 0.249 | 1.216 | 1.479 | 1.055 | 2.049 | 2.488 | 0.287 | 1.523 | 1.208 | 0.816 | 0.528 | 0.765 | 0.585 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16102
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
ERKSKKLERKKDA,KRLKFSMERKSKKLERKKD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.318
|
0.480
|
0.024
|
0.091
|
0.936
|
0.162
|
0.494
|
0.022
|
0.084
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004917
|
2.000
|
1.000
|
Hsc_gene_13066.t1
|
Hsc_gene_13066.t1
|
— |
Q19714.1 Calcium load-activated calcium channel homolog [Caenorhabditis elegans]
|
KAI1732755.1 integral membrane protein DUF106 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005262|GO:0005789|GO:0016020|GO:0032469
|
GO:0005575_0.927|GO:0110165_0.926|GO:0016020_0.876|GO:0005622_0.830|GO:0008150_0.820|GO:0043226_0.817|GO:0043229_0.809|GO:0043227_0.780|GO:0005737_0.777|GO:0009987_0.769|GO:0043231_0.767|GO:0071944_0.699|GO:0005886_0.686|GO:0051179_0.667|GO:0051234_0.651|GO:0005773_0.572|GO:0012505_0.561|GO:0006810_0.547
|
IPR002809+4-175_6-174+|IPR008559+1-193_1-194+
|
SM01415+4-175+
|
PF01956+6-174+Integral_membrane_protein_EMC3/TMCO1-like
|
— |
PTHR20917+1-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
7tut_8
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
22644.250
|
10.536
|
11.500
|
23.881
|
12.438
|
45.274
|
54.726
|
14.925
|
8.955
|
44.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightgreen
|
174.115
|
119.074
|
151.924
|
166.161
|
181.001
|
168.361
|
162.999
|
154.772
|
32.284
|
323.430
|
198.653
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.344
|
0.239
|
— | — | — | — | — |
-3.451
|
— | — | — | — |
No JSON data available for plots.