Hg_chrom9_TN10mRNA_17047
Organism: Heterodera glycines Gene Locus: chr9:2835635-2837569 Feature type: polypeptideProtein Sequence
Length: 432
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.346 | 0.8 | 0.878 | 1.042 | 0.831 | 0.716 | 1.736 | 1.337 | 1.47 | 0.631 | 1.225 | 1.929 | 0.623 | 1.37 | 0.86 | 0.569 | 1.228 | 0.534 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16103
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.289
|
0.477
|
0.061
|
0.412
|
0.742
|
0.252
|
0.575
|
0.005
|
0.207
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004916
|
2.000
|
1.000
|
Hsc_gene_13065.t1
|
Hsc_gene_13065.t1
|
— |
Q7KWM5.1 Alpha-1,3/1,6-mannosyltransferase ALG2 [Dictyostelium discoideum]
|
KAI1726274.1 glycosyl transferases group 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004378|GO:0006486|GO:0016757
|
GO:0005575_0.807|GO:0110165_0.807|GO:0008150_0.680|GO:0005622_0.617|GO:0009987_0.604|GO:0071944_0.560|GO:0043226_0.551|GO:0043229_0.529|GO:0008152_0.510|GO:0016020_0.505
|
IPR001296+229-403+|IPR027054+1-430+|IPR028098+12-188+
|
— |
PF00534+229-403+Glycosyl_transferases_group_1|PF13439+12-188+Glycosyltransferase_Family_4
|
— |
PTHR45918+1-430+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-432
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
48575.070
|
7.653
|
8.500
|
25.000
|
12.731
|
43.519
|
56.481
|
14.352
|
10.648
|
47.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
217.095
|
294.851
|
136.873
|
158.813
|
161.357
|
173.790
|
308.629
|
218.056
|
277.512
|
197.017
|
231.515
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.338
|
-1.030
|
0.324
|
— | — |
0.839
|
— |
0.643
|
— | — | — | — | — |
No JSON data available for plots.