SCN Proteipedia

Hg_chrom9_TN10mRNA_17050

Organism: Heterodera glycines Gene Locus: chr9:2842191-2847365 Feature type: polypeptide

Protein Sequence

Length: 529

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.615	1.231	1.169	0.13	1.827	1.406	0.45	0.756	1.134	1.482	1.432	1.779	1.155	0.473	1.389	0.729	0.682	0.773	0.872	1.001	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16106	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.974

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KRKL	—	—	—	—	—	—	0.000	—	—	0.457	0.122	0.011	0.630	0.151	0.174	0.283	0.005	0.335	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012634	1.000	1.000	Hsc_gene_13074.t1	Hsc_gene_13074.t1	—	P26042.3 Moesin [Sus scrofa]	KAF7636184.1 FERM domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0005856\|GO:0008092	GO:0005575_0.889\|GO:0110165_0.881\|GO:0008150_0.865\|GO:0005622_0.830\|GO:0009987_0.786\|GO:0016020_0.767\|GO:0043226_0.739\|GO:0043229_0.689\|GO:0071944_0.665\|GO:0005886_0.656\|GO:0005737_0.650\|GO:0065007_0.643\|GO:0003674_0.638\|GO:0071840_0.631\|GO:0050789_0.624\|GO:0016043_0.619\|GO:0005488_0.592\|GO:0050794_0.585\|GO:0005515_0.581\|GO:0043228_0.560\|GO:0043232_0.560\|GO:0032502_0.509\|GO:0048518_0.508	IPR000299+6-296+\|IPR000798+18-37_70-89_114-135_160-177_210-230_484-505_506-527+\|IPR008954+447-529_448-529+\|IPR011174+1-322_3-419_318-443_430-529+\|IPR011259+455-529+\|IPR011993+202-297+\|IPR014352+85-200+\|IPR018979+10-70+\|IPR018980+211-299_211-300+\|IPR019747+59-89_177-206+\|IPR019748+91-207_99-199+\|IPR019749+2-207_38-50_105-118_118-138_187-203+\|IPR029071+3-88+\|IPR035963+90-199+\|IPR041789+201-296+	SM00295+2-207+\|SM01196+211-300+	PF00373+91-207+FERM_central_domain\|PF00769+455-529+Ezrin/radixin/moesin_family_C_terminal\|PF09379+10-70+FERM_N-terminal_domain\|PF09380+211-299+FERM_C-terminal_PH-like_domain	G3DSA:1.20.80.10:FF:000002+84-200+radixin_isoform_X1\|G3DSA:2.30.29.30:FF:000003+202-297+Radixin_isoform_1\|G3DSA:3.10.20.90:FF:000013+5-83+radixin_isoform_X1	PTHR23281+3-419+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	356-529	1.000	1-355	1e5w_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.589	62321.010	6.182	-2.000	35.161	10.208	55.198	44.802	17.769	17.391	37.996

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	red	545.621	48.077	145.703	385.618	996.285	648.929	1118.337	279.452	41.583	997.505	587.824

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.368	2.867	1.514	1.339	-0.604	0.796	-1.325	2.146	-4.655	—	—	—	—

No JSON data available for plots.

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