Hg_chrom9_TN10mRNA_17051
Organism: Heterodera glycines Gene Locus: chr9:2848297-2849539 Feature type: polypeptideProtein Sequence
Length: 275
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.846 | 1.455 | 1.505 | 0.788 | 0.839 | 0.866 | 2.182 | 0.485 | 1.671 | 0.165 | 0.642 | 1.919 | 1.189 | 1.113 | 1.455 | 0.715 | 0.771 | 0.559 | 0.428 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16107
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-26
|
0.994
|
1.000
|
1.000
|
1.000
|
0.169
|
0.025
|
0.004
|
0.254
|
0.238
|
0.787
|
0.556
|
0.271
|
0.767
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012635
|
1.000
|
1.000
|
Hsc_gene_13075.t1
|
Hsc_gene_13075.t1;Hsc_gene_578.t1
|
— | — |
XP_006815725.1 PREDICTED: SCO-spondin-like, partial [Saccoglossus kowalevskii]
|
No
|
-0.660
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.895|GO:0110165_0.895|GO:0071944_0.849|GO:0008150_0.808|GO:0065007_0.758|GO:0050789_0.745|GO:0009987_0.734|GO:0032501_0.714|GO:0005622_0.708|GO:0005886_0.704|GO:0016020_0.704|GO:0051239_0.610|GO:0003674_0.547|GO:0050794_0.547|GO:0005737_0.546|GO:0043226_0.546|GO:0043227_0.538|GO:0043229_0.526|GO:0043231_0.525
|
IPR002172+39-82_39-83_45-81_48-81_57-78_86-121_86-122_86-123_87-121_97-118+|IPR036055+44-83_45-83_84-121_84-124+|IPR050685+41-124+
|
SM00192+39-83_86-123+
|
PF00057+45-81_86-121+Low-density_lipoprotein_receptor_domain_class_A
|
— |
PTHR24270+41-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-275
|
9cwm_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
30127.720
|
4.746
|
-11.000
|
23.636
|
13.455
|
45.091
|
54.909
|
10.909
|
12.727
|
56.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
purple
|
516.524
|
68.061
|
140.409
|
163.881
|
304.433
|
878.373
|
3320.340
|
408.016
|
1.028
|
277.705
|
159.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
1.129
|
0.334
|
0.862
|
1.542
|
1.929
|
-1.222
|
3.172
|
-7.888
|
7.224
|
— | — | — |