Hg_chrom9_TN10mRNA_17052
Organism: Heterodera glycines Gene Locus: chr9:2849750-2854755 Feature type: polypeptideProtein Sequence
Length: 480
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 0.969 | 0.644 | 2.514 | 1.354 | 1.015 | 0.496 | 1.354 | 0.602 | 1.267 | 1.263 | 1.593 | 1.215 | 0.721 | 1.361 | 0.893 | 0.956 | 0.915 | 1.282 | 0.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16108
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— |
RKEMVEEEKREKAKQKRP,KREKAKQKRPTTGNTPNANKKKLADEKKKAVHRWLKN
|
— | — | — | — | — | — |
0.008
|
— | — |
0.331
|
0.378
|
0.021
|
0.420
|
0.455
|
0.285
|
0.458
|
0.025
|
0.219
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004919
|
1.000
|
2.000
|
Hsc_gene_13076.t1;Hsc_gene_13076.t2
|
Hsc_gene_13076.t1;Hsc_gene_13076.t2
|
— |
Q9NWF9.3 E3 ubiquitin-protein ligase RNF216 [Homo sapiens]
|
KAI1719832.1 IBR domain, a half RING-finger domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.954|GO:0005575_0.919|GO:0009987_0.915|GO:0110165_0.915|GO:0065007_0.910|GO:0050789_0.901|GO:0003674_0.886|GO:0050794_0.881|GO:0050896_0.857|GO:0005622_0.834|GO:0008152_0.793|GO:0043170_0.793|GO:0044238_0.782|GO:0044237_0.769|GO:0009058_0.762|GO:0009059_0.760|GO:0044249_0.760|GO:0019222_0.759|GO:0010467_0.754|GO:0019538_0.750|GO:0031323_0.749|GO:0048583_0.743|GO:0060255_0.742|GO:0006950_0.735|GO:0009889_0.724|GO:0010556_0.724|GO:0031326_0.724|GO:0010468_0.721|GO:0005737_0.714|GO:0003824_0.712|GO:0043412_0.712|GO:0009605_0.707|GO:0036211_0.705|GO:0140096_0.703|GO:0044419_0.702|GO:0009607_0.695|GO:0043207_0.695|GO:0051707_0.695|GO:0006952_0.694|GO:0016740_0.693|GO:0009056_0.688|GO:0032501_0.688|GO:0098542_0.688|GO:0080134_0.687|GO:0016020_0.684|GO:0016567_0.682|GO:0032446_0.682|GO:0043687_0.682|GO:0070647_0.682|GO:0032101_0.681|GO:0031347_0.680|GO:0000209_0.676|GO:0002831_0.675|GO:0016746_0.669|GO:0016755_0.665|GO:0019787_0.665|GO:0004842_0.663|GO:0061630_0.661|GO:0061659_0.661|GO:0043226_0.634|GO:0043229_0.627|GO:0048519_0.620|GO:0048523_0.598|GO:0005829_0.588|GO:0043227_0.587|GO:0051239_0.575|GO:0043231_0.568|GO:0009892_0.535|GO:0031324_0.531|GO:0010605_0.529|GO:0051241_0.526|GO:0009890_0.523|GO:0010558_0.523|GO:0031327_0.523|GO:0009057_0.519|GO:0006508_0.517|GO:0140546_0.516|GO:0010629_0.515|GO:0030163_0.515|GO:0001816_0.514|GO:0001817_0.514|GO:0043632_0.509|GO:0051603_0.509|GO:0006511_0.508|GO:0009615_0.508|GO:0010498_0.508|GO:0019941_0.508|GO:0005634_0.505|GO:0001818_0.504|GO:0032479_0.504|GO:0032480_0.504|GO:0032606_0.504|GO:0032608_0.504|GO:0032648_0.504|GO:0043161_0.504|GO:0050688_0.504|GO:0050691_0.504|GO:0051607_0.504|GO:0070936_0.504
|
IPR013083+170-274+|IPR044066+171-407+|IPR047546+344-394+|IPR051628+167-450+
|
— | — | — |
PTHR22770+167-450+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
431-480
|
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
54788.510
|
8.376
|
22.500
|
29.375
|
10.208
|
49.583
|
50.417
|
17.708
|
11.667
|
47.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
334.587
|
66.551
|
166.266
|
171.415
|
423.841
|
218.116
|
606.099
|
61.029
|
7.550
|
815.664
|
469.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.086
|
1.228
|
— |
1.276
|
-0.944
|
1.484
|
-1.946
|
3.454
|
-5.721
|
4.689
|
— | — | — |
No JSON data available for plots.