Hg_chrom9_TN10mRNA_17053
Organism: Heterodera glycines Gene Locus: chr9:2854954-2858197 Feature type: polypeptideProtein Sequence
Length: 564
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.155 | 1.161 | 0.55 | 1.005 | 1.409 | 0.654 | 1.418 | 1.34 | 1.27 | 0.806 | 1.252 | 1.428 | 0.75 | 1.339 | 1.14 | 1.017 | 0.94 | 0.546 | 0.678 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16109
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKTVIFVNECRRCDR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.628
|
0.269
|
0.015
|
0.630
|
0.065
|
0.031
|
0.056
|
0.008
|
0.042
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012636
|
1.000
|
1.000
|
Hsc_gene_13077.t1
|
Hsc_gene_13077.t1
|
— |
Q3MSQ8.1 Probable ATP-dependent RNA helicase DDX4 [Pelophylax lessonae]
|
KAI3422036.1 putative ATP-dependent RNA helicase ddx4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.836|GO:0110165_0.831|GO:0005622_0.770|GO:0008150_0.764|GO:0005737_0.680|GO:0003674_0.679|GO:0009987_0.655|GO:0043226_0.634|GO:0043229_0.616|GO:0005488_0.513
|
IPR001650+347-500_360-458_375-458+|IPR011545+126-306+|IPR014001+120-335_133-321+|IPR014014+101-129+|IPR027417+66-313_181-477_319-505+|IPR050079+93-551+
|
SM00487+120-335+|SM00490+375-458+
|
PF00270+126-306+DEAD/DEAH_box_helicase|PF00271+360-458+Helicase_conserved_C-terminal_domain
|
— |
PTHR47959+93-551+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-63;502-564
|
1.000
|
64-501
|
2hjv_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
63982.580
|
7.049
|
5.000
|
27.128
|
10.993
|
51.773
|
48.227
|
14.716
|
12.411
|
48.050
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
785.128
|
1621.258
|
507.995
|
693.267
|
1016.456
|
957.147
|
2274.503
|
592.715
|
367.793
|
285.338
|
320.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.904
|
-1.363
|
0.557
|
0.520
|
— |
1.260
|
-0.797
|
2.083
|
— | — | — | — | — |
No JSON data available for plots.