Hg_chrom9_TN10mRNA_17054
Organism: Heterodera glycines Gene Locus: chr9:2860254-2864766 Feature type: polypeptideProtein Sequence
Length: 755
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.986 | 0.862 | 0.722 | 0.411 | 0.861 | 0.849 | 1.104 | 1.656 | 1.236 | 1.128 | 0.421 | 1.325 | 1.067 | 1.019 | 1.514 | 1.23 | 1.042 | 1.044 | 1.63 | 0.623 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16110
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRPDSADEATERRRNRS,RRTAKDDGPSDGESPRARR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.068
|
0.179
|
0.083
|
0.326
|
0.240
|
0.422
|
0.271
|
0.052
|
0.743
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012637
|
1.000
|
1.000
|
Hsc_gene_13078.t2
|
Hsc_gene_13078.t1;Hsc_gene_13078.t2
|
— |
Q21565.2 Putative ammonium transporter 3 [Caenorhabditis elegans]
|
KAF7640231.1 Ammonium transporter [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008519|GO:0016020|GO:0072488
|
GO:0008150_0.960|GO:0009987_0.881|GO:0051179_0.803|GO:0051234_0.799|GO:0006810_0.797|GO:0005575_0.761|GO:0110165_0.758|GO:0016020_0.714|GO:0055085_0.707|GO:0071705_0.701|GO:0071944_0.672|GO:0098660_0.664|GO:0098662_0.654|GO:0005886_0.645|GO:0072488_0.627|GO:0003674_0.580
|
IPR001905+26-434+|IPR024041+29-435+|IPR029020+15-444+
|
— |
PF00909+29-435+Ammonium_Transporter_Family
|
G3DSA:1.10.3430.10:FF:000008+14-444+Ammonium_transporter
|
PTHR11730+20-443+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
497-755
|
1.000
|
1-496
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
82765.010
|
8.827
|
20.500
|
22.649
|
11.391
|
44.636
|
55.364
|
13.510
|
9.139
|
53.775
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
157.343
|
181.950
|
319.026
|
195.785
|
87.488
|
64.432
|
132.690
|
188.320
|
106.279
|
170.032
|
142.709
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
— |
-0.595
|
-1.196
|
-0.426
|
1.053
|
1.434
|
— | — | — | — | — | — |
No JSON data available for plots.