Hg_chrom9_TN10mRNA_17055
Organism: Heterodera glycines Gene Locus: chr9:2864943-2868166 Feature type: polypeptideProtein Sequence
Length: 329
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 0.848 | 1.271 | 0.524 | 1.672 | 0.935 | 0.832 | 0.456 | 1.486 | 1.109 | 1.151 | 1.073 | 1.013 | 0.877 | 1.675 | 0.738 | 0.548 | 1.105 | 0.701 | 0.536 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16111
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— |
KRRS
|
13-36
|
0.912
|
— | — | — | — |
0.000
|
— | — |
0.155
|
0.802
|
0.257
|
0.520
|
0.039
|
0.037
|
0.086
|
0.055
|
0.114
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012638
|
1.000
|
1.000
|
Hsc_gene_13079.t1
|
Hsc_gene_13079.t1
|
— |
Q0VC80.1 Threonylcarbamoyl-AMP synthase [Bos taurus]
|
KAF7640203.1 YrdC-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003725
|
GO:0005575_0.711|GO:0110165_0.704|GO:0008150_0.628|GO:0016020_0.618|GO:0009987_0.580|GO:0003674_0.563
|
IPR006070+46-232_55-230+|IPR017945+46-238+|IPR050156+50-271+
|
— |
PF01300+55-230+Telomere_recombination
|
G3DSA:3.90.870.10:FF:000007+39-240+YrdC_N6-threonylcarbamoyltransferase_domain_containing
|
PTHR17490+50-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
261-329
|
1.000
|
1-260
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
37192.420
|
5.630
|
-2.500
|
33.739
|
7.295
|
49.544
|
50.456
|
16.717
|
17.021
|
46.505
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
tan
|
1027.085
|
701.508
|
1085.146
|
982.886
|
1033.781
|
839.243
|
980.373
|
780.622
|
1911.066
|
658.865
|
1195.523
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.398
|
0.349
|
— | — |
-0.286
|
0.235
|
— |
0.472
|
— | — | — | — | — |
No JSON data available for plots.