Hg_chrom9_TN10mRNA_17062
Organism: Heterodera glycines Gene Locus: chr9:2887123-2890657 Feature type: polypeptideProtein Sequence
Length: 787
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.65 | 1.655 | 1.132 | 3.155 | 1.144 | 0.782 | 0.666 | 1.144 | 0.819 | 0.944 | 1.136 | 0.897 | 1.447 | 0.977 | 0.934 | 0.926 | 0.812 | 0.674 | 0.586 | 0.86 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16117
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
nucleus
|
RKLAKLDKLPPIPEVKVKR,KLKRHAINRARKLAKLDKLPPIPEVKVK
|
— | — | — | — |
1-35
|
0.572
|
0.523
|
1.000
|
1.000
|
0.227
|
0.024
|
0.037
|
0.233
|
0.290
|
0.621
|
0.378
|
0.064
|
0.734
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012642
|
1.000
|
1.000
|
Hsc_gene_13081.t1
|
Hsc_gene_13081.t1
|
— | — |
KAK6101745.1 EGF-like domain family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.971|GO:0005575_0.915|GO:0110165_0.915|GO:0071944_0.713|GO:0016020_0.706|GO:0005886_0.637|GO:0032501_0.595|GO:0009987_0.581|GO:0005622_0.575|GO:0032502_0.571|GO:0048856_0.571|GO:0043226_0.566|GO:0043227_0.533|GO:0003674_0.506
|
IPR000742+99-137_102-137_125-136_144-213_201-212_265-312_268-312_357-410_476-515_485-515_503-514_576-640_642-683_645-683_671-682_685-724_688-724_712-723+|IPR051830+100-420+
|
SM00181+102-137_144-213_268-312_357-410_485-515_576-640_645-683_688-724+
|
— | — |
PTHR24033+100-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-787
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
88534.510
|
6.540
|
1.000
|
27.446
|
11.182
|
49.047
|
50.953
|
14.358
|
13.088
|
54.638
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
211.475
|
46.279
|
183.535
|
139.389
|
341.291
|
280.897
|
440.993
|
127.836
|
8.223
|
333.955
|
194.356
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.754
|
1.453
|
-0.285
|
1.261
|
-0.267
|
0.662
|
-1.246
|
1.932
|
-5.457
|
— | — | — | — |