SCN Proteipedia

Hg_chrom9_TN10mRNA_17063

Organism: Heterodera glycines Gene Locus: chr9:2891207-2898355 Feature type: polypeptide

Protein Sequence

Length: 1,857

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.67	0.764	1.194	0.668	1.301	1.174	0.724	1.185	1.089	1.303	0.694	1.774	1.361	0.88	1.55	1.154	0.644	1.012	0.953	0.729	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16118	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.808

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	AKKRHVKRKKTPK	—	—	—	—	—	—	0.000	—	—	0.669	0.243	0.007	0.422	0.134	0.205	0.054	0.015	0.117	0.110

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012643	1.000	1.000	Hsc_gene_13082.t1	Hsc_gene_13082.t1	—	Q9LQV2.1 RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]	KAI1732698.1 RNA dependent RNA polymerase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003968	GO:0008150_0.965\|GO:0009987_0.923\|GO:0065007_0.861\|GO:0050789_0.837\|GO:0050794_0.819\|GO:0008152_0.793\|GO:0044237_0.778\|GO:0009058_0.769\|GO:0043170_0.761\|GO:0044249_0.752\|GO:0009059_0.736\|GO:0048519_0.736\|GO:0019222_0.734\|GO:0048523_0.725\|GO:0010467_0.723\|GO:0031323_0.723\|GO:0060255_0.720\|GO:0009889_0.707\|GO:0010556_0.704\|GO:0031326_0.704\|GO:0010468_0.702\|GO:0009892_0.691\|GO:0005575_0.688\|GO:0010605_0.687\|GO:0031324_0.686\|GO:0009890_0.682\|GO:0010558_0.682\|GO:0031327_0.682\|GO:0010629_0.678\|GO:0110165_0.678\|GO:0031047_0.670\|GO:0044238_0.649\|GO:0005622_0.610\|GO:0016020_0.608\|GO:0006139_0.587\|GO:0034654_0.574\|GO:0090304_0.570\|GO:0016070_0.563\|GO:0141187_0.563\|GO:0032774_0.560\|GO:0010608_0.558\|GO:0043226_0.554\|GO:0016441_0.552\|GO:0050896_0.541\|GO:0043229_0.537\|GO:0043227_0.513	IPR007855+343-1416_631-1251+	—	PF05183+631-1251+RNA_dependent_RNA_polymerase	—	PTHR23079+343-1416+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	174-356;1800-1857	2.000	1-173;357-1799	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.534	211420.410	5.798	-19.000	28.918	10.985	48.788	51.212	14.540	14.378	46.904

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	4205.643	5019.843	5045.923	3442.942	4054.699	4116.335	4145.246	4777.872	5460.729	2828.071	3956.353

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.221	-0.681	-0.443	0.205	—	—	—	—	—	—	2.459	—	—

No JSON data available for plots.

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