Hg_chrom9_TN10mRNA_17064
Organism: Heterodera glycines Gene Locus: chr9:2898773-2900340 Feature type: polypeptideProtein Sequence
Length: 235
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.039 | 1.583 | 0.696 | 0.147 | 1.206 | 2.073 | 0.608 | 0.426 | 0.946 | 0.748 | 1.161 | 1.252 | 1.064 | 0.655 | 1.216 | 1.094 | 1.744 | 0.709 | 1.309 | 0.375 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16119
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.285
|
0.278
|
0.079
|
0.610
|
0.103
|
0.265
|
0.332
|
0.013
|
0.406
|
0.256
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012644
|
1.000
|
1.000
|
Hsc_gene_13083.t1
|
Hsc_gene_13083.t1
|
— |
O55057.1 Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta [Mus musculus]
|
KAI1728565.1 GMP-PDE, delta subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.778|GO:0110165_0.773|GO:0016020_0.704|GO:0043226_0.690|GO:0008150_0.672|GO:0043227_0.642|GO:0005622_0.613|GO:0043229_0.501
|
IPR008015+97-234+|IPR014756+89-235+|IPR037036+87-235+
|
— |
PF05351+97-234+GMP-PDE,_delta_subunit
|
— |
PTHR12976+96-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-128
|
1.000
|
129-235
|
5e80_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
26337.400
|
10.029
|
7.000
|
25.532
|
7.660
|
58.723
|
41.277
|
14.468
|
11.064
|
51.489
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
822.452
|
433.104
|
1072.939
|
650.434
|
240.336
|
165.767
|
122.756
|
510.581
|
355.220
|
2133.344
|
1371.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.078
|
0.450
|
-0.613
|
-1.467
|
-0.522
|
-0.424
|
1.522
|
-1.916
|
-2.696
|
— | — | — | — |
No JSON data available for plots.