Hg_chrom9_TN10mRNA_17065
Organism: Heterodera glycines Gene Locus: chr9:2901132-2902577 Feature type: polypeptideProtein Sequence
Length: 116
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.301 | 0.802 | 0.94 | 0.0 | 1.724 | 0.884 | 0.411 | 0.862 | 1.724 | 1.048 | 1.306 | 2.028 | 1.676 | 0.995 | 1.935 | 0.739 | 0.707 | 0.653 | 0.663 | 2.028 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16120
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.386
|
0.078
|
0.579
|
0.268
|
0.267
|
0.192
|
0.039
|
0.334
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012645
|
1.000
|
1.000
|
Hsc_gene_13084.t1
|
Hsc_gene_13084.t1
|
— |
Q09490.1 Protein lgg-1 [Caenorhabditis elegans]
|
KHN87854.1 Protein lgg-1 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.856|GO:0110165_0.844|GO:0005622_0.814|GO:0043226_0.737|GO:0016020_0.734|GO:0043229_0.724|GO:0005737_0.713|GO:0008150_0.680|GO:0043227_0.659|GO:0043231_0.648|GO:0009987_0.627
|
IPR004241+1-116_13-116+|IPR029071+1-116+
|
— |
PF02991+13-116+Autophagy_protein_Atg8_ubiquitin_like
|
G3DSA:3.10.20.90:FF:000037+1-116+Gamma-aminobutyric_acid_receptor-associated_protein-like_1
|
PTHR10969+1-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-116
|
8tgx_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
14132.260
|
9.479
|
4.000
|
35.345
|
15.517
|
51.724
|
48.276
|
19.828
|
15.517
|
33.621
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
5116.828
|
3459.464
|
4221.311
|
3802.561
|
4679.077
|
6075.505
|
4569.103
|
14965.084
|
3687.464
|
3955.984
|
3840.904
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.267
|
0.391
|
-0.400
|
1.197
|
-1.568
|
— | — | — | — | — |
No JSON data available for plots.