Hg_chrom9_TN10mRNA_17066
Organism: Heterodera glycines Gene Locus: chr9:2903804-2904719 Feature type: polypeptideProtein Sequence
Length: 171
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 1.36 | 1.17 | 0.605 | 0.975 | 1.2 | 0.418 | 1.754 | 0.65 | 1.422 | 0.975 | 1.376 | 1.624 | 1.35 | 1.671 | 0.585 | 0.383 | 0.62 | 2.249 | 1.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16121
|
— | — |
2.444
|
3.000
|
3.000
|
1.000
|
2.000
|
2.000
|
3.000
|
2.000
|
3.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.047
|
0.962
|
0.011
|
0.194
|
0.012
|
0.056
|
0.060
|
0.012
|
0.061
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012646
|
1.000
|
1.000
|
Hsc_gene_13085.t1
|
Hsc_gene_13085.t1
|
— |
Q5RC24.3 Cytochrome b-c1 complex subunit 7 [Pongo abelii]
|
XP_024502163.1 Cytochrome b-c1 complex subunit 7 [Strongyloides ratti];CEF62961.1 Cytochrome b-c1 complex subunit 7 [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005750|GO:0006122
|
GO:0005575_0.874|GO:0110165_0.874|GO:0005622_0.833|GO:0043226_0.783|GO:0016020_0.780|GO:0005737_0.765|GO:0043229_0.764|GO:0043227_0.744|GO:0043231_0.727|GO:0008150_0.662|GO:0009987_0.602|GO:0005739_0.566|GO:0008152_0.546|GO:0044238_0.530|GO:0044237_0.516|GO:0009058_0.515
|
IPR003197+61-147_61-151+|IPR036544+45-153_58-151+
|
— |
PF02271+61-147+Ubiquinol-cytochrome_C_reductase_complex_14kD_subunit
|
— |
PTHR12022+61-151+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
171-171
|
1.000
|
1-170
|
9hzl_S
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
20466.360
|
8.979
|
7.000
|
30.409
|
17.544
|
47.368
|
52.632
|
18.129
|
12.281
|
41.520
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
4169.836
|
1054.332
|
2578.881
|
3382.827
|
4911.958
|
4795.889
|
2933.974
|
4480.635
|
4444.998
|
5857.347
|
5252.055
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.061
|
1.545
|
0.500
|
0.506
|
— |
-0.698
|
— |
-0.467
|
— | — | — | — | — |
No JSON data available for plots.