Hg_chrom9_TN10mRNA_17067
Organism: Heterodera glycines Gene Locus: chr9:2905245-2907242 Feature type: polypeptideProtein Sequence
Length: 437
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 1.277 | 1.123 | 1.026 | 0.763 | 0.939 | 0.354 | 1.602 | 0.763 | 1.144 | 0.867 | 1.615 | 2.034 | 1.144 | 1.168 | 1.111 | 0.713 | 0.832 | 2.464 | 0.942 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16122
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.769
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — |
11-39
|
0.988
|
— | — |
0.000
|
— | — |
0.131
|
0.035
|
0.002
|
0.180
|
0.564
|
0.303
|
0.850
|
0.005
|
0.178
|
0.240
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012647
|
1.000
|
1.000
|
Hsc_gene_13087.t1
|
Hsc_gene_13086.t1;Hsc_gene_13087.t1
|
— |
G5EFP5.1 Alpha-(1,3)-fucosyltransferase fut-3 [Caenorhabditis elegans]
|
KAF7638262.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.882|GO:0003674_0.837|GO:0003824_0.714|GO:0016740_0.652|GO:0005575_0.624|GO:0110165_0.624|GO:0016757_0.618|GO:0016758_0.618|GO:0008152_0.610|GO:0008417_0.606|GO:0009987_0.570|GO:0016020_0.539|GO:0071944_0.531
|
IPR001503+89-428_236-405+|IPR031481+86-202+|IPR038577+164-378+
|
— |
PF00852+236-405+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+86-202+Fucosyltransferase,_N-terminal
|
G3DSA:3.40.50.11660:FF:000002+164-379+Alpha-(1,3)-fucosyltransferase
|
PTHR11929+89-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-437
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
50798.970
|
7.914
|
10.000
|
25.400
|
16.934
|
46.682
|
53.318
|
14.645
|
10.755
|
48.741
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
901.308
|
1011.252
|
902.611
|
668.837
|
732.248
|
712.396
|
2000.565
|
800.922
|
420.231
|
1067.236
|
789.948
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.394
|
-0.734
|
-0.323
|
— | — |
1.500
|
— |
1.463
|
— | — | — | — | — |
No JSON data available for plots.