Hg_chrom9_TN10mRNA_17068
Organism: Heterodera glycines Gene Locus: chr9:2907628-2909945 Feature type: polypeptideProtein Sequence
Length: 527
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.618 | 0.75 | 0.897 | 0.785 | 1.423 | 0.876 | 0.339 | 1.518 | 1.476 | 1.539 | 0.719 | 1.786 | 1.529 | 0.73 | 1.588 | 1.003 | 0.995 | 0.92 | 1.168 | 0.837 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRR,KKICNDLNGVLRRRIM,RRWCLTTVEEDAKFLRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.381
|
0.306
|
0.008
|
0.590
|
0.145
|
0.271
|
0.240
|
0.088
|
0.242
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012648
|
1.000
|
1.000
|
Hsc_gene_13088.t1
|
Hsc_gene_13088.t1;Hsc_gene_13088.t2
|
— |
Q55GC2.1 Serine/threonine-protein kinase dst2 [Dictyostelium discoideum]
|
KAH7726624.1 Protein kinase domain containing protein [Aphelenchus avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.931|GO:0009987_0.853|GO:0005575_0.771|GO:0110165_0.771|GO:0003674_0.741|GO:0003824_0.691|GO:0005622_0.660|GO:0016740_0.655|GO:0140096_0.633|GO:0065007_0.607|GO:0050789_0.600|GO:0050896_0.600|GO:0016772_0.583|GO:0050794_0.574|GO:0016301_0.564|GO:0016773_0.562|GO:0004672_0.554|GO:0005737_0.538|GO:0051716_0.524|GO:0008152_0.513|GO:0071840_0.501
|
IPR000719+33-351_104-345+|IPR011009+29-347+|IPR050660+32-345+
|
— |
PF00069+104-345+Protein_kinase_domain
|
— |
PTHR43671+32-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-527
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
61579.110
|
6.806
|
3.000
|
29.032
|
12.903
|
48.767
|
51.233
|
15.560
|
13.472
|
41.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
535.651
|
41.026
|
128.603
|
126.479
|
388.833
|
329.265
|
959.754
|
127.419
|
5.139
|
1551.603
|
888.833
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.417
|
1.487
|
— |
1.589
|
— |
1.554
|
-1.479
|
3.057
|
-8.343
|
4.787
|
— | — | — |
No JSON data available for plots.