Hg_chrom9_TN10mRNA_17070
Organism: Heterodera glycines Gene Locus: chr9:2911666-2912745 Feature type: polypeptideProtein Sequence
Length: 128
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.363 | 1.453 | 0.426 | 1.886 | 0.521 | 1.002 | 0.558 | 1.953 | 1.389 | 1.056 | 0.473 | 0.46 | 2.387 | 0.901 | 1.594 | 1.897 | 0.64 | 1.302 | 0.601 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16125
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.806
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — |
36-58
|
0.940
|
— | — |
0.000
|
— | — |
0.113
|
0.023
|
0.007
|
0.219
|
0.295
|
0.815
|
0.448
|
0.101
|
0.857
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004758
|
2.000
|
1.000
|
Hsc_gene_13090.t1
|
Hsc_gene_13090.t1
|
— | — |
KAF7640216.1 EGF-like domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.930|GO:0008150_0.924|GO:0110165_0.922|GO:0009987_0.865|GO:0065007_0.862|GO:0050789_0.851|GO:0050794_0.827|GO:0050896_0.814|GO:0051716_0.788|GO:0023052_0.773|GO:0007154_0.767|GO:0007165_0.758|GO:0005576_0.602
|
IPR000742+8-55_43-54+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-128
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
14500.690
|
9.156
|
9.500
|
20.312
|
14.844
|
47.656
|
52.344
|
14.844
|
5.469
|
52.344
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
black
|
324.871
|
8.120
|
24.777
|
59.852
|
151.334
|
643.673
|
886.567
|
916.875
|
2.747
|
410.051
|
235.492
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.377
|
2.745
|
1.383
|
1.306
|
2.102
|
0.473
|
— | — |
-7.332
|
4.620
|
— | — | — |
No JSON data available for plots.